View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_high_13 (Length: 278)
Name: NF5378_high_13
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 336350 - 336094
Alignment:
| Q |
1 |
ttgttgctgaaactgttttaagaaacgatcattcaattttgtcatagattttagacgtgtccaatttcaagcccataaaaccttttttcccagaagtttt |
100 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336350 |
ttgttgctgaaactgttttaagaaatggtcattcaattttgtcatagattttagacgtgtccaatttcaagcccataaaaccttttttcccagaagtttt |
336251 |
T |
|
| Q |
101 |
atttctcatgaaatgaaaacatcaaaatctgacaacacgttatcagtaattaatctaagaggtacaaaaacactttcagaagtatcagttatgtctggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336250 |
atttctcatgaaatgaaaacatcaaaatctgacaacacgttatcagtaattaatctaagaggtacaaaaacactttcagaagtatcagttatgtctggta |
336151 |
T |
|
| Q |
201 |
aaaagaatttcaaacgattaacaatctatcttcagctatatgtctggtatatcagttat |
259 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
336150 |
aaaagaatttcaaacgattaacaatctatcttcagc--tatgtctggtatatcagttat |
336094 |
T |
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