View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_high_17 (Length: 254)
Name: NF5378_high_17
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_high_17 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 36374449 - 36374210
Alignment:
| Q |
14 |
taatactgacagaatcgacttactgtaacaactgaaaacaaaaaactaataggacaacttttgtaagaaacgttgcaaataataatgaaatataaagaac |
113 |
Q |
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| T |
36374449 |
taatactgacagaatcgacttactgtaacaactgata-caaaaaactaataggacaacttttgtaagaaacgttgcaaataataatgaaatataaagaac |
36374351 |
T |
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| Q |
114 |
agaggatattacccttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagc |
213 |
Q |
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| T |
36374350 |
agaggatattatccttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagc |
36374251 |
T |
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| Q |
214 |
aaccagaattgcagaaaacctcttttgacctaggactcctt |
254 |
Q |
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| T |
36374250 |
aaccagaattgcagaaatcctcttttgacctaggactcctt |
36374210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 254
Target Start/End: Complemental strand, 36417650 - 36417533
Alignment:
| Q |
137 |
aatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaaacctct |
236 |
Q |
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| T |
36417650 |
aatcacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctct |
36417551 |
T |
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| Q |
237 |
tttgacctaggactcctt |
254 |
Q |
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| T |
36417550 |
ttttatcaaggactcctt |
36417533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 36426507 - 36426361
Alignment:
| Q |
108 |
aagaacagaggatattacccttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgt |
207 |
Q |
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| T |
36426507 |
aagaacaggggatatcatcccaaaaaataaattacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactat |
36426408 |
T |
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| Q |
208 |
agaagcaaccagaattgcagaaaacctcttttgacctaggactcctt |
254 |
Q |
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| T |
36426407 |
agaagctacaagaattgcagctaacctctttttgccaaggactcctt |
36426361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 36388283 - 36388181
Alignment:
| Q |
137 |
aatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaaacctct |
236 |
Q |
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||||||||||| | ||| ||||||||||| || | |||| ||||||||||||||||||| |||| | ||||||| || |||||||||| ||||||| |
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| T |
36388283 |
aatcacataccctccctttttttcttccacatgtagttcacacaggagaggaggaggacaattgcaattatagaagctacaagaattgcagccaacctct |
36388184 |
T |
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| Q |
237 |
ttt |
239 |
Q |
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||| |
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| T |
36388183 |
ttt |
36388181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 36404997 - 36404895
Alignment:
| Q |
137 |
aatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaaacctct |
236 |
Q |
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|||| |||||| ||| || ||||||||||| || || ||| |||||||||||| |||||| ||||| ||||||| ||||||||||||| ||||||| |
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| T |
36404997 |
aatcgcataccctttgtttttttcttccacatgtaatttacacaggagaggaggatgacaattgcaacaatagaagctaccagaattgcagccaacctct |
36404898 |
T |
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| Q |
237 |
ttt |
239 |
Q |
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||| |
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| T |
36404897 |
ttt |
36404895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 36412300 - 36412202
Alignment:
| Q |
156 |
ttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaaacctcttttgacctaggactcctt |
254 |
Q |
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| T |
36412300 |
ttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctttttatcaaggactcctt |
36412202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 36434356 - 36434224
Alignment:
| Q |
98 |
atgaaatataaagaacagaggatattacccttaaaattgaatcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggac-- |
195 |
Q |
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| T |
36434356 |
atgaaatataaagatctggagatatcatccttaaaaataaattacataccctttgtttttttcttccacttgcaatacacacaggagaggacgaggacga |
36434257 |
T |
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| Q |
196 |
-aatcgcaactgtagaagcaaccagaattgcag |
227 |
Q |
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| T |
36434256 |
taacagcaactatagaagctaccaaaattgcag |
36434224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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