View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5378_low_1 (Length: 699)
Name: NF5378_low_1
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 681
Target Start/End: Original strand, 4563153 - 4563815
Alignment:
| Q |
17 |
gatatgaataattgaatacctaaagaagatgcattctgaatgtatttagtagtgcgttgtcctgtgatgaaacggtggcgatcaaagagatgaaaaaatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4563153 |
gatatgaataattgaatacctaaagaagatgcattctgaatgtatttagtagtgcgttgtcctgtgatgaaacggtggcgatcaaagagctgaaaaaatc |
4563252 |
T |
|
| Q |
117 |
cagtgatgcaaccaatctgcttctgcaattctttcttttcatctttcatagatttcaagccnnnnnnngacatttttatttcccttcaaacttcaactct |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4563253 |
cagtgatgcaaccaatttgcttctgcaattctttcttttcatctttcatagatttcaagcctttttttgacatttttatttcccttcaaacttcaactct |
4563352 |
T |
|
| Q |
217 |
gttttgtccacagtttcaaacaatcatgcccctattgaatgtaaaagaannnnnnnnnnnnnnnnnnaattcaattgaaatatagcaacaatttcatggt |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
4563353 |
gttttgtctacagtttcaaacaatcatgcccctaatgaatgtaaaagaaaaaatctttgaaatttttaattcaattgatatatagcaacaatttcatggt |
4563452 |
T |
|
| Q |
317 |
tttaaattgtagtcgcggctacagtcacactaaatatctttatatttaagaaaaatgcggcctatgcatttgaaattgcaattgtgatgccgatgcgatg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4563453 |
tttaaattgtagtcgcggctacagtcacactaaatatctttatatttaagaaaaatgc-gccgatgcatttgaaattgcaattgtgatgccgatgcgatg |
4563551 |
T |
|
| Q |
417 |
accttaaaatcttcttgattatttcgaccatagtagtaaattcactataatttgaatatgtttgctggataatgtttttgatcatgc-nnnnnnnnttca |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
4563552 |
accttaaaatcttcttgattatttcgaccatagtagtaaattgactataatttgaatatgtttgctggataatg--cttgatcatgcaaaaaaaaattca |
4563649 |
T |
|
| Q |
516 |
ttgtgtatccgtgtgaacagaagagaatcatagttttgaattgtggtatgcaactacaatttcggttgtatatgacacatttaccgtaatataaaagttt |
615 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||||||| |
|
|
| T |
4563650 |
ttgtgtatccgtgtgaacggaaaagaatcatagttttgaattgtggtatgcaactacaatttcggttatatctaacacatttactgtaatataaaagttt |
4563749 |
T |
|
| Q |
616 |
gcagtgtaatcgcgatttaaaactatgaagataatgtgttcggattgatggatagaatgaaagaca |
681 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4563750 |
gcattgtaatcgcgatttaaaactatgaagataatgtcttcggattgatggatagaatgaaagaca |
4563815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 5027341 - 5027420
Alignment:
| Q |
95 |
cgatcaaagagatgaaaaaatccagtgatgcaaccaatctgcttctgcaattctttcttttcatctttcatagatttcaa |
174 |
Q |
| |
|
|||||||| || |||||||||||| | ||||| ||||| |||||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
5027341 |
cgatcaaatagctgaaaaaatccactaatgcatccaatttgcttctgcaattcttgattttcatctttcattgatgtcaa |
5027420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 624
Target Start/End: Complemental strand, 30688397 - 30688368
Alignment:
| Q |
595 |
tttaccgtaatataaaagtttgcagtgtaa |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30688397 |
tttaccgtaatataaaagtttgcagtgtaa |
30688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 8011580 - 8011628
Alignment:
| Q |
95 |
cgatcaaagagatgaaaaaatccagtgatgcaaccaatctgcttctgca |
143 |
Q |
| |
|
||||||||||| ||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
8011580 |
cgatcaaagagctgaaaaattccagtcatacaaccaatctgcttctgca |
8011628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University