View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_10 (Length: 379)
Name: NF5378_low_10
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 39246178 - 39245979
Alignment:
| Q |
13 |
ataattctcacaaaagcttcc-gaaaactaatttggccaatcaaaattattgctctgcggaatacacagaaaaccaagggaatatacgttccaaccaaaa |
111 |
Q |
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| T |
39246178 |
ataattctcacgaaagcttcctgaaaactaatttggccaatcaaaattgttgctctacggaatacacggaaaaccaagggaatatacgttccaaccaaaa |
39246079 |
T |
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| Q |
112 |
tatatcagcttttcctcgagataaattcgggccaaattgttcgctatgaatagtattttccatttattaatagtcagacacatttctcacaaatttatta |
211 |
Q |
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| T |
39246078 |
tatatcagctttttctcgagataaattcgggccaaattgttcgctatgaatagtattttccatttattaatagtcagacatatttctcacaaatttatta |
39245979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 203 - 344
Target Start/End: Complemental strand, 39245668 - 39245527
Alignment:
| Q |
203 |
aatttattactctaacaagtttattttaatacctttgatttttgttaaaaagtttttataataagagactggggagagagtgcatagacacacacattta |
302 |
Q |
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| T |
39245668 |
aatttattactctaacaagtttcttttaatacctttgatttttgttaaaaagtttctataataagagactggggagagagtacatagacagacacattta |
39245569 |
T |
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| Q |
303 |
ttcttaactttcaataaatattcccaatttaattaaccatgc |
344 |
Q |
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| T |
39245568 |
ttcttaactttcgataaatattcccaatttaattaaccatgc |
39245527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 39308169 - 39308104
Alignment:
| Q |
13 |
ataattctcacaaaagcttccgaaaactaatttggccaatcaaaattattgctctgcggaatacac |
78 |
Q |
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|||||||||| |||||| ||||||| |||||||||||||||| || ||||| |||||||||||| |
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| T |
39308169 |
ataattctcaagaaagctcccgaaaatcaatttggccaatcaaagttgttgctttgcggaatacac |
39308104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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