View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_11 (Length: 378)
Name: NF5378_low_11
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 40 - 360
Target Start/End: Original strand, 40644492 - 40644817
Alignment:
| Q |
40 |
aaattcaaaaatgacttttacggtggataaaatataaattgtaagtatgaacctagttatttaatgatcaattttgatttctttaataatcaatatggac |
139 |
Q |
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| T |
40644492 |
aaattcaaagatgacttttacggtggataaaatataaattgtaagtatgaacctagttatttaatgatcaattttgctttctttaataatcaatatgaac |
40644591 |
T |
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| Q |
140 |
acggttcaacaatcctctcaaaatccctnnnnnnnnn-ctcctctcaaagaaatatgaacatggttcaaaaataaagtgaacaagactcagctccctcgc |
238 |
Q |
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| T |
40644592 |
acggttcaacaatcctctcaaaatccctaaaaaaagaactcctctcaaagaaatatgaacatggttcaaaaataaagtgaacaagactcagctccctcgc |
40644691 |
T |
|
| Q |
239 |
tatttcggcctatcacatttgcaggactccattatttgcttcggtgcaacaagatacttctatttgaaagttggagaaagataaca----ttttttattt |
334 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
40644692 |
tatttcggcctatcacatttgcacgactccattatttgcttcggtgcaacaagatacttctatttgaaagttggagaaagataacattatttatttattt |
40644791 |
T |
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| Q |
335 |
atttattgtacaagagaaggctgaag |
360 |
Q |
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| T |
40644792 |
atttattgtacaagagagggctgaag |
40644817 |
T |
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