View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_14 (Length: 273)
Name: NF5378_low_14
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 39245216 - 39245470
Alignment:
| Q |
19 |
tttattccttcacctcttactctattttgactagtattccaacaaaatctcatgaccacactaaataaacatctgtttgtggtatgcttgacacacttca |
118 |
Q |
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| T |
39245216 |
tttattccttcacctcttactctattttgactagtattccaacaaaatctcatgaccacactaaataaacatctgtttgtggtatgcttgacacacttca |
39245315 |
T |
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| Q |
119 |
caactaaccaaaatcaccgtaaacacatgtttattttttggatataggatgagttttttaggtggttgaataatgttcactttattttccattatgttca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245316 |
caactaaccaaaatcaccgtaaacacatgtttattttttggatataggatgagttttttaggtggttgaataatgttcactttattttccattatgttca |
39245415 |
T |
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| Q |
219 |
ttggggtccagactttgtagctatttagttggaatagttggggtcttgtgatttc |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245416 |
ttggggtccagactttgtagctatttagttggaatagttggggtcttgtgatttc |
39245470 |
T |
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