View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_15 (Length: 272)
Name: NF5378_low_15
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10832392 - 10832497
Alignment:
| Q |
1 |
catgatgcacttgaaactgctcatgagactcatcaacctaagtttaacgccac-------tttatacattaaaattcactctttgagacacattaaccta |
93 |
Q |
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| T |
10832392 |
catgatgcacttgaaactgctcatgagactcatcaacctaagtttaacgccactttatagtttatacattaaaattcactctttgagacacatcaaccta |
10832491 |
T |
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| Q |
94 |
agtgtt |
99 |
Q |
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|||||| |
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| T |
10832492 |
agtgtt |
10832497 |
T |
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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 10832528 - 10832650
Alignment:
| Q |
130 |
tttgagtaatggtgaattctagggtgagtgttcaattaagtttctttaaaaaagattaataacttcctttttcttcnnnnnnnnctaatgacggctttct |
229 |
Q |
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|||||| ||||||||||||||||||||| || |||||| | ||| |||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
10832528 |
tttgagcaatggtgaattctagggtgaggatttaattaaatccctt-aaaaaagattaataacttcctttttctttaaaaaagactaatgactgctttct |
10832626 |
T |
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| Q |
230 |
ttccatctttcttattttacggtt |
253 |
Q |
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|||||||||||||||||||||||| |
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| T |
10832627 |
ttccatctttcttattttacggtt |
10832650 |
T |
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