View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_19 (Length: 251)
Name: NF5378_low_19
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_19 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 44261487 - 44261727
Alignment:
| Q |
11 |
ttatactcttgttgatcctttatcacccaacactcagtaatacacatcaagtaatgaacagtcaatgctgttcggttttatttttctgaaaactactttc |
110 |
Q |
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| T |
44261487 |
ttatgctcttgttgatcctttatcacccaacactcagtagtacacatcaagtaatgaacagtcaatgctgttcggttttatttttctgaaaactactttc |
44261586 |
T |
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| Q |
111 |
ttcaccttttttcctttgtatcacaacattgacaatgttaggtaatataagcatatgctggttctatttatctgtgacataaaatgcatgaacccctaac |
210 |
Q |
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| T |
44261587 |
ttcaccttttttcctttgtatcacaacaatgacaatgttaggtaatataagcatatgctgtttctatttatctgtgacataaaatgcatgaacccctaac |
44261686 |
T |
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| Q |
211 |
ccctattttaatcctccaaagataaagactccatcactcca |
251 |
Q |
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| T |
44261687 |
ccctattttaatcctccaaagataaagactccatcagtcca |
44261727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 47872682 - 47872636
Alignment:
| Q |
200 |
gaacccctaacccctattttaatcctccaaagataaagactccatca |
246 |
Q |
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| T |
47872682 |
gaacccctaacccctattttaatactccaaagatatagactccatca |
47872636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 49441346 - 49441396
Alignment:
| Q |
103 |
ctactttcttcaccttttttcctttgtatcacaacattgacaatgttaggt |
153 |
Q |
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| T |
49441346 |
ctactttcttcaattttttccctttgtatcacaacaatgacaatgttaggt |
49441396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 49547309 - 49547350
Alignment:
| Q |
193 |
aatgcatgaacccctaacccctattttaatcctccaaagata |
234 |
Q |
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| T |
49547309 |
aatgcatgaacctctaacccctattttaatactccaaagata |
49547350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 47987562 - 47987606
Alignment:
| Q |
109 |
tcttcaccttttttcctttgtatcacaacattgacaatgttaggt |
153 |
Q |
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| T |
47987562 |
tcttcacctgttttcctttgtatcataatattgacaatattaggt |
47987606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 55771111 - 55771063
Alignment:
| Q |
186 |
gacataaaatgcatgaacccctaacccctattttaatcctccaaagata |
234 |
Q |
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| T |
55771111 |
gacaaaaaatgcatgaaccccaaacctctattttaatactccaaagata |
55771063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 55835340 - 55835297
Alignment:
| Q |
191 |
aaaatgcatgaacccctaacccctattttaatcctccaaagata |
234 |
Q |
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| T |
55835340 |
aaaatgcatgaaccccaaacctctattttaatactccaaagata |
55835297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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