View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_2 (Length: 628)
Name: NF5378_low_2
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 19 - 619
Target Start/End: Original strand, 33383525 - 33384125
Alignment:
| Q |
19 |
cataggatgaaggttatgatggtattttcaaataaaagtgactattggattgaaaaaggtttcaatccgaaaactacgttggtaggggaaggtttgtggg |
118 |
Q |
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| T |
33383525 |
cataggatgaaggttatgatggtattttcaaataaaagtgactattggattgaaaaaggtttcaatccgaaaactacgttggtaggggaaggttggtggg |
33383624 |
T |
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| Q |
119 |
atgagaagaaaaattcattgtgtgtagttgcttgccatttcattggcatcatgaaatcttccttgaatggcattcgtcttggcgattgctcggtaagatt |
218 |
Q |
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| T |
33383625 |
atgagaagaaaaattcattgtgtgtagttgcttgccatttcattggcatcatgaaatcttccttgaatggcattcgtcttggcgattgctcggtaagatt |
33383724 |
T |
|
| Q |
219 |
gagattgaaattcccttcagtttggtcaataaaaaatactaatagcatagttggacaaatttggagcaacaagagtgctaatgatccaaactacttcaag |
318 |
Q |
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| T |
33383725 |
gagattgaaattcccttcagtttggtcaataaaaaatactaatagcatagttggacaaatttggagcaacaagagtgctaatgatccaaactacttcaag |
33383824 |
T |
|
| Q |
319 |
atgataacatttagaaatttcgaagatgacagggttggatatcgagcgtcgaagtacgagtatagtcagcttgaaagagttaagaaatcatgtccaacac |
418 |
Q |
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| T |
33383825 |
atgataacatttagaaatttcgaagatgacagggttggatatcgagcgtcgaagtacgagtatagccagcttgaaagagttaagaaatcatgtccaacac |
33383924 |
T |
|
| Q |
419 |
acaagattgtcaaggacaaaggtagaacaagatttccagatgtttattcttacgatatgagatttgatatgtcagttagagatagagagtccaatataag |
518 |
Q |
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| T |
33383925 |
acaaggttgtcaaggacaaaggtagaacaagatttccagatgtttattcttacgatatgagatttgatatgtcagttagagatagagagtccaatataag |
33384024 |
T |
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| Q |
519 |
agtagcatctggttcttcagctcctttatctgttggtgatcaagtttatgatgatcctcttactatttcaaattccacatcagaaactcctatgatgatg |
618 |
Q |
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| T |
33384025 |
agtagcatctggttcttcagctcctttatctgttggtgatcaagtttatgatgatcctcttactatttcaaattccacatcagaaactcctatggtgatg |
33384124 |
T |
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| Q |
619 |
t |
619 |
Q |
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| T |
33384125 |
t |
33384125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 79 - 332
Target Start/End: Original strand, 33377453 - 33377706
Alignment:
| Q |
79 |
ttcaatccgaaaactacgttggtaggggaaggtttgtgggatgagaagaaaaattcattgtgtgtagttgcttgccatttcattggcatcatgaaatct- |
177 |
Q |
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| T |
33377453 |
ttcaatgccaaaactatgttgataggggaaggatggtgggatgagaagaaaaatatgttgtgtgtagttctttgccatttcaatggtagca---aatcta |
33377549 |
T |
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| Q |
178 |
--tccttgaatggcattcgtcttggcgattgctcggtaagattgagattgaaattcccttcagtttggtcaataaaaaatactaatagcatagttggaca |
275 |
Q |
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| T |
33377550 |
catccttggatggaactcatgttggtgattgttcattaagattaagattgagattcccctcaatttggtcaatcaaaaacagtagtagcatagttggcca |
33377649 |
T |
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| Q |
276 |
aatttggagcaacaagagtgctaatgatccaaactacttcaagatgataacatttag |
332 |
Q |
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||||||||| ||||| ||||||||||||| |||||||||||| | ||||||| |||| |
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| T |
33377650 |
aatttggagtaacaaaagtgctaatgatcaaaactacttcaaaacgataacagttag |
33377706 |
T |
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Back To:
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