View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5378_low_22 (Length: 229)

Name: NF5378_low_22
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5378_low_22
NF5378_low_22
[»] chr8 (7 HSPs)
chr8 (10-120)||(2785936-2786046)
chr8 (193-229)||(2786119-2786155)
chr8 (193-227)||(13568906-13568940)
chr8 (193-226)||(19176138-19176171)
chr8 (193-229)||(12802613-12802649)
chr8 (193-229)||(17069843-17069879)
chr8 (193-229)||(17578394-17578430)
[»] chr4 (11 HSPs)
chr4 (10-59)||(53563300-53563349)
chr4 (193-228)||(26866863-26866898)
chr4 (193-227)||(375426-375460)
chr4 (193-229)||(25124245-25124281)
chr4 (193-229)||(28501385-28501421)
chr4 (193-229)||(29520163-29520199)
chr4 (196-228)||(36391859-36391891)
chr4 (196-228)||(37352549-37352581)
chr4 (196-228)||(37357448-37357480)
chr4 (193-225)||(37776740-37776772)
chr4 (193-229)||(53564355-53564391)
[»] chr2 (9 HSPs)
chr2 (10-58)||(14951873-14951921)
chr2 (10-58)||(2415502-2415550)
chr2 (193-228)||(44573882-44573917)
chr2 (196-229)||(23788974-23789007)
chr2 (193-229)||(2060318-2060354)
chr2 (193-229)||(7116298-7116334)
chr2 (196-228)||(8841657-8841689)
chr2 (193-225)||(9701072-9701104)
chr2 (193-229)||(28566153-28566189)
[»] chr6 (5 HSPs)
chr6 (13-58)||(25026156-25026201)
chr6 (193-228)||(27581389-27581424)
chr6 (193-229)||(11161853-11161889)
chr6 (193-229)||(13011119-13011155)
chr6 (193-229)||(23604462-23604498)
[»] chr3 (10 HSPs)
chr3 (193-228)||(6784465-6784500)
chr3 (193-227)||(29454787-29454821)
chr3 (195-228)||(8546908-8546941)
chr3 (196-229)||(46878438-46878471)
chr3 (10-58)||(2579254-2579301)
chr3 (197-229)||(22527620-22527652)
chr3 (193-225)||(27687988-27688020)
chr3 (193-229)||(29719709-29719745)
chr3 (193-229)||(31397768-31397804)
chr3 (193-225)||(33360887-33360919)
[»] chr1 (4 HSPs)
chr1 (193-228)||(38261342-38261377)
chr1 (11-56)||(49161460-49161505)
chr1 (193-225)||(23530544-23530576)
chr1 (193-229)||(42276160-42276196)
[»] scaffold0308 (1 HSPs)
scaffold0308 (196-228)||(14348-14380)
[»] chr7 (3 HSPs)
chr7 (193-229)||(12631815-12631851)
chr7 (193-225)||(35569654-35569686)
chr7 (196-228)||(41003154-41003186)
[»] chr5 (2 HSPs)
chr5 (193-229)||(3028015-3028051)
chr5 (193-229)||(23260137-23260173)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 2785936 - 2786046
Alignment:
Q  10 aagaaaataaaaacataaattttaagcttgaaagtctatatgcaaatggattcttgaaggtcgaatatagctttgtgaattgtgaccgctcaccgtagaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785936 aagaaaataaaaacataaattttaagcttgaaagtctatatgcaaatggattcttgaaggtcgaatatagctttgtgaattgtgaccgctcaccgtagaa 2786035  T
Q  110 ttgatatcaac 120  Q
    |||||||||||    
T  2786036 ttgatatcaac 2786046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 2786119 - 2786155
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    |||||||||||||||||||||||| ||||||||||||    
T  2786119 ctacctccgtcctcaattataagatccttttgagaaa 2786155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 13568940 - 13568906
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgaga 227  Q
    ||||||||||||| |||||||||||||||||||||    
T  13568940 ctacctccgtccttaattataagacccttttgaga 13568906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 19176138 - 19176171
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgag 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  19176138 ctacctccgtccttaattataagacccttttgag 19176171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 12802613 - 12802649
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  12802613 ctacctccgtccctaattataagacccttttgagaaa 12802649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 17069879 - 17069843
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  17069879 ctacctccgtccctaattataagacccttttgagaaa 17069843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 17578394 - 17578430
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  17578394 ctacctccgtccctaattataagacccttttgagaaa 17578430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 53563300 - 53563349
Alignment:
Q  10 aagaaaataaaaacataaattttaagcttgaaagtctatatgcaaatgga 59  Q
    |||||||||||||||| |||||||||||||||| || |||||||||||||    
T  53563300 aagaaaataaaaacatgaattttaagcttgaaaatcaatatgcaaatgga 53563349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 26866898 - 26866863
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaa 228  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26866898 ctacctccgtccttaattataagacccttttgagaa 26866863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 375426 - 375460
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgaga 227  Q
    ||||||||||||| |||||||||||||||||||||    
T  375426 ctacctccgtccttaattataagacccttttgaga 375460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 25124281 - 25124245
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  25124281 ctacctccgtccctaattataagacccttttgagaaa 25124245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 28501421 - 28501385
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  28501421 ctacctccgtccctaattataagacccttttgagaaa 28501385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 29520199 - 29520163
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  29520199 ctacctccgtccctaattataagacccttttgagaaa 29520163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 36391859 - 36391891
Alignment:
Q  196 cctccgtcctcaattataagacccttttgagaa 228  Q
    |||||||||| ||||||||||||||||||||||    
T  36391859 cctccgtccttaattataagacccttttgagaa 36391891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 37352549 - 37352581
Alignment:
Q  196 cctccgtcctcaattataagacccttttgagaa 228  Q
    |||||||||| ||||||||||||||||||||||    
T  37352549 cctccgtccttaattataagacccttttgagaa 37352581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 37357448 - 37357480
Alignment:
Q  196 cctccgtcctcaattataagacccttttgagaa 228  Q
    |||||||||| ||||||||||||||||||||||    
T  37357448 cctccgtccttaattataagacccttttgagaa 37357480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 37776772 - 37776740
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttga 225  Q
    ||||||||||||| |||||||||||||||||||    
T  37776772 ctacctccgtccttaattataagacccttttga 37776740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 53564391 - 53564355
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  53564391 ctacctccgtccctaattataagacccttttgagaaa 53564355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 14951873 - 14951921
Alignment:
Q  10 aagaaaataaaaacataaattttaagcttgaaagtctatatgcaaatgg 58  Q
    ||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  14951873 aagaaaataaatacatgaattttaagcttgaaaatctatatgcaaatgg 14951921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 2415502 - 2415550
Alignment:
Q  10 aagaaaataaaaacataaattttaagcttgaaagtctatatgcaaatgg 58  Q
    ||||||||||||| || |||||||||||||||| | |||||||||||||    
T  2415502 aagaaaataaaaatatgaattttaagcttgaaaatttatatgcaaatgg 2415550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 44573917 - 44573882
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaa 228  Q
    ||||||||||||| ||||||||||||||||||||||    
T  44573917 ctacctccgtccttaattataagacccttttgagaa 44573882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 23788974 - 23789007
Alignment:
Q  196 cctccgtcctcaattataagacccttttgagaaa 229  Q
    |||||||||| |||||||||||||||||||||||    
T  23788974 cctccgtccttaattataagacccttttgagaaa 23789007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 2060318 - 2060354
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  2060318 ctacctccgtccctaattataagacccttttgagaaa 2060354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 7116334 - 7116298
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  7116334 ctacctccgtccctaattataagacccttttgagaaa 7116298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 8841689 - 8841657
Alignment:
Q  196 cctccgtcctcaattataagacccttttgagaa 228  Q
    |||||||||| ||||||||||||||||||||||    
T  8841689 cctccgtccttaattataagacccttttgagaa 8841657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 9701072 - 9701104
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttga 225  Q
    ||||||||||||| |||||||||||||||||||    
T  9701072 ctacctccgtccttaattataagacccttttga 9701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 28566153 - 28566189
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  28566153 ctacctccgtccctaattataagacccttttgagaaa 28566189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 25026156 - 25026201
Alignment:
Q  13 aaaataaaaacataaattttaagcttgaaagtctatatgcaaatgg 58  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||||    
T  25026156 aaaattaaaacatgaattttaagcttgaaaatctatatgcaaatgg 25026201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 27581389 - 27581424
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaa 228  Q
    |||||||||||| |||||||||||||||||||||||    
T  27581389 ctacctccgtccccaattataagacccttttgagaa 27581424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 11161853 - 11161889
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  11161853 ctacctccgtccttaattataagagccttttgagaaa 11161889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 13011155 - 13011119
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  13011155 ctacctccgtccttaattataagatccttttgagaaa 13011119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 23604462 - 23604498
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  23604462 ctacctccgtccctaattataagacccttttgagaaa 23604498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 6784465 - 6784500
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaa 228  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6784465 ctacctccgtccttaattataagacccttttgagaa 6784500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 29454821 - 29454787
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgaga 227  Q
    ||||||||||||| |||||||||||||||||||||    
T  29454821 ctacctccgtccttaattataagacccttttgaga 29454787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 8546908 - 8546941
Alignment:
Q  195 acctccgtcctcaattataagacccttttgagaa 228  Q
    ||||||||||| ||||||||||||||||||||||    
T  8546908 acctccgtccttaattataagacccttttgagaa 8546941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 46878471 - 46878438
Alignment:
Q  196 cctccgtcctcaattataagacccttttgagaaa 229  Q
    |||||||||| |||||||||||||||||||||||    
T  46878471 cctccgtccttaattataagacccttttgagaaa 46878438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 2579254 - 2579301
Alignment:
Q  10 aagaaaataaaaacataaattttaagcttgaaagtctatatgcaaatgg 58  Q
    ||||||||| |||||| |||||||||||||||| || ||||||||||||    
T  2579254 aagaaaatacaaacatgaattttaagcttgaaa-tccatatgcaaatgg 2579301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 22527652 - 22527620
Alignment:
Q  197 ctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||| |||||||||||||||||||||||    
T  22527652 ctccgtccttaattataagacccttttgagaaa 22527620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 27687988 - 27688020
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttga 225  Q
    ||||||||||||| |||||||||||||||||||    
T  27687988 ctacctccgtccttaattataagacccttttga 27688020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 29719745 - 29719709
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  29719745 ctacctccgtccataattataagacccttttgagaaa 29719709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 31397768 - 31397804
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    |||||||| |||| |||||||||||||||||||||||    
T  31397768 ctacctccttccttaattataagacccttttgagaaa 31397804  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 33360887 - 33360919
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttga 225  Q
    ||||||||||||| |||||||||||||||||||    
T  33360887 ctacctccgtccttaattataagacccttttga 33360919  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 38261342 - 38261377
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaa 228  Q
    ||||||||||||| ||||||||||||||||||||||    
T  38261342 ctacctccgtccttaattataagacccttttgagaa 38261377  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 49161505 - 49161460
Alignment:
Q  11 agaaaataaaaacataaattttaagcttgaaagtctatatgcaaat 56  Q
    ||||| ||||| ||||||||| |||||||||| |||||||||||||    
T  49161505 agaaattaaaaccataaatttaaagcttgaaaatctatatgcaaat 49161460  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 23530544 - 23530576
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttga 225  Q
    ||||||||||||| |||||||||||||||||||    
T  23530544 ctacctccgtccttaattataagacccttttga 23530576  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 42276196 - 42276160
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  42276196 ctacctccgtccctaattataagacccttttgagaaa 42276160  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 14380 - 14348
Alignment:
Q  196 cctccgtcctcaattataagacccttttgagaa 228  Q
    |||||||||| ||||||||||||||||||||||    
T  14380 cctccgtccttaattataagacccttttgagaa 14348  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 12631851 - 12631815
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  12631851 ctacctccgtccttaattataagaccattttgagaaa 12631815  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 35569686 - 35569654
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttga 225  Q
    ||||||||||||| |||||||||||||||||||    
T  35569686 ctacctccgtccttaattataagacccttttga 35569654  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 41003186 - 41003154
Alignment:
Q  196 cctccgtcctcaattataagacccttttgagaa 228  Q
    |||||||||| ||||||||||||||||||||||    
T  41003186 cctccgtccttaattataagacccttttgagaa 41003154  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 3028015 - 3028051
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  3028015 ctacctccgtccctaattataagacccttttgagaaa 3028051  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 23260173 - 23260137
Alignment:
Q  193 ctacctccgtcctcaattataagacccttttgagaaa 229  Q
    ||||||||||||  |||||||||||||||||||||||    
T  23260173 ctacctccgtccctaattataagacccttttgagaaa 23260137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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