View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5378_low_23 (Length: 224)

Name: NF5378_low_23
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5378_low_23
NF5378_low_23
[»] chr3 (5 HSPs)
chr3 (24-191)||(1047659-1047828)
chr3 (17-111)||(1072462-1072556)
chr3 (24-111)||(1088133-1088220)
chr3 (130-182)||(1073569-1073621)
chr3 (40-86)||(1104702-1104748)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 1047659 - 1047828
Alignment:
Q  24 acagattttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgcnnnnnnnatgga 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |       |||||    
T  1047659 acagatcttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatgttcttctcaaacatttattctttttgtatgga 1047758  T
Q  124 ttatataaatgacactagaagaggcatcatag--ttaggcttctttttccgatggccaactttaaatttc 191  Q
    |||||||||||||||| ||||||||| |||||  |||| ||||||||||||||||||||||| |||||||    
T  1047759 ttatataaatgacacttgaagaggcaccatagtattagacttctttttccgatggccaacttgaaatttc 1047828  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 1072462 - 1072556
Alignment:
Q  17 acttaagacagattttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1072462 acttaagacagattttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgc 1072556  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 1088133 - 1088220
Alignment:
Q  24 acagattttaacattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatattcttctcaaacatttatgc 111  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  1088133 acagatttcatcattccaacaatatctatatattcgaatggatgcttccacagtaggtaaatgctatgttcttctcacacatttatgc 1088220  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 1073569 - 1073621
Alignment:
Q  130 aaatgacactagaagaggcatcatagttaggcttctttttccgatggccaact 182  Q
    |||||||||||||||||||| |||||||||  ||||||| |||||||||||||    
T  1073569 aaatgacactagaagaggcaccatagttagatttcttttcccgatggccaact 1073621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 1104702 - 1104748
Alignment:
Q  40 caacaatatctatatattcgaatggatgcttccacagtaggtaaatg 86  Q
    |||||| |||| ||| |||||||||||||||||||||||||||||||    
T  1104702 caacaagatctttatgttcgaatggatgcttccacagtaggtaaatg 1104748  T

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