View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5378_low_3 (Length: 571)
Name: NF5378_low_3
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 30202304 - 30202579
Alignment:
| Q |
1 |
atcacataaaacacagttttgtgaactttcttgggctaatac-----tacacgcacgattcattcttgtcggaattctatcaaggagtagtttccaagag |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30202304 |
atcacataaaacacagttttgtgaactttcttgggttaatacatttctacacgcacgattcattcttgtcggaattctatcaaggagtagtttccaggag |
30202403 |
T |
|
| Q |
96 |
aaagtgatcactttggatggagccggtctcttccaaatatgctcaaaaccctcttctcatcatcacttctattattctcccataccatcttctataatac |
195 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30202404 |
aaagtgatcactttggatggagccggactcttccaaatatgctcaaaactctcttctcatcatcacttctattattctcccataccatcttctataatac |
30202503 |
T |
|
| Q |
196 |
gaatgatgtcttacaaagtcttgttacttggttattctttagcatattgtatctcatgtccatgcattgcaaccca |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30202504 |
taatgatgtcttacaaagtcttgttacttggttattctttagcctattgtatctcatgtccatgcattgcaaccca |
30202579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 384 - 554
Target Start/End: Original strand, 30202823 - 30202993
Alignment:
| Q |
384 |
aaatcttacagtggaagtcaactacgtcgcatacagcttacgaaatgccgaaatatttcgcacagacaatttagtaaggttgcaaacaaatttcctctgc |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30202823 |
aaatcttacagtggaagtcaactacgtcgcatacagcttacgaaatgccgaaatatttcgcacagacaatttagtaaggttgcaaacaaatttcctctgc |
30202922 |
T |
|
| Q |
484 |
tagaggagcttgacatttcatttaacaacctatgtaaggattctcttgaagtcattggtcggagttgtcca |
554 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30202923 |
tagaggagcttgacatttcatttagcaacctatgtaaggattctcttgaagtcattggtcggagttgtcca |
30202993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 384 - 550
Target Start/End: Original strand, 30230671 - 30230837
Alignment:
| Q |
384 |
aaatcttacagtggaagtcaactacgtcgcatacagcttacgaaatgccgaaatatttcgcacagacaatttagtaaggttgcaaacaaatttcctctgc |
483 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||||| |||| |||||||||| | ||||||||||||||||| |||| |
|
|
| T |
30230671 |
aaatcttacagtggaagtcacctacgacgcatccaacttacaaaatgccgaaatattttacacaaacaatttagtgaagttgcaaacaaatttccactgc |
30230770 |
T |
|
| Q |
484 |
tagaggagcttgacatttcatttaacaacctatgtaaggattctcttgaagtcattggtcggagttg |
550 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30230771 |
tagaggagctggacatttcatttagcaacctatgtaaggattctcttgaagtcattggtcggagttg |
30230837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 384 - 550
Target Start/End: Original strand, 30223675 - 30223841
Alignment:
| Q |
384 |
aaatcttacagtggaagtcaactacgtcgcatacagcttacgaaatgccgaaatatttcgcacagacaatttagtaaggttgcaaacaaatttcctctgc |
483 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||| || ||||| |||||||||||||||| ||||| |||| ||||| | ||||||| ||||||||| |||| |
|
|
| T |
30223675 |
aaatcttacagtggaagtcacctacgacacatgcaacttacaaaatgccgaaatattttgcacaaacaaattagtgaagttgcaatcaaatttccactgc |
30223774 |
T |
|
| Q |
484 |
tagaggagcttgacatttcatttaacaacctatgtaaggattctcttgaagtcattggtcggagttg |
550 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30223775 |
tagaggagcttgacatttcatttagcaacctatgtaaggattctcttgaagtcattggtcggagttg |
30223841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 385 - 544
Target Start/End: Complemental strand, 16644328 - 16644169
Alignment:
| Q |
385 |
aatcttacagtggaagtcaactacgtcgcatacagcttacgaaatgccgaaatatttcgcacagacaatttagtaaggttgcaaacaaatttcctctgct |
484 |
Q |
| |
|
||||| |||||||| || | ||||| ||||| | ||| || | ||| | ||||||||||| || ||| || ||| | ||||||||||||||||| ||| | |
|
|
| T |
16644328 |
aatctcacagtggatgtaacctacggcgcattcggctaacaatatgtcaaaatatttcgcccaaacagttcagtgaagttgcaaacaaatttccactgtt |
16644229 |
T |
|
| Q |
485 |
agaggagcttgacatttcatttaacaacctatgtaaggattctcttgaagtcattggtcg |
544 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
16644228 |
agaggagcttgacatttcatttagcaacatatctaaggattctcttgaattcattggtcg |
16644169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 385 - 544
Target Start/End: Complemental strand, 17618689 - 17618530
Alignment:
| Q |
385 |
aatcttacagtggaagtcaactacgtcgcatacagcttacgaaatgccgaaatatttcgcacagacaatttagtaaggttgcaaacaaatttcctctgct |
484 |
Q |
| |
|
||||| |||||||| || | ||||| ||||| | ||| || | ||| | ||||||||||| || ||| || ||| | ||||||||||||||||| ||| | |
|
|
| T |
17618689 |
aatctcacagtggatgtaacctacggcgcattcggctaacaatatgtcaaaatatttcgcccaaacagttcagtgaagttgcaaacaaatttccactgtt |
17618590 |
T |
|
| Q |
485 |
agaggagcttgacatttcatttaacaacctatgtaaggattctcttgaagtcattggtcg |
544 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
17618589 |
agaggagcttgacatttcatttagcaacatatctaaggattctcttgaattcattggtcg |
17618530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University