View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_4 (Length: 554)
Name: NF5378_low_4
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 314 - 531
Target Start/End: Complemental strand, 632945 - 632731
Alignment:
| Q |
314 |
tgtgtagtatttttatttagaattgtaacaagtattcctctnnnnnnnngtatttctctacataacgtccaaaacgaaaaagtatttctccacagggttg |
413 |
Q |
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| T |
632945 |
tgtgtagtatttttatttagaattgtaacaagtattcctctaaaaaaaagtatttctctacataacgtccaaaacgaaaaagtatttatccacagggttg |
632846 |
T |
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| Q |
414 |
tcnnnnnnncttctttttcttagactacccgtgaagcaactctttcaacttcgacgacgcgtatgcaagtcatggaactctctcatatctaatcccaatt |
513 |
Q |
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| T |
632845 |
tctttttttcttctttttcttagactacccgtgaagcaactctttcaacttcgacg---cgtatgcaagtcatggaactctctcatctctaatcccaatt |
632749 |
T |
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| Q |
514 |
ttgccaagaagcacattc |
531 |
Q |
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| T |
632748 |
ttgccaagaagcacattc |
632731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 115 - 296
Target Start/End: Complemental strand, 635173 - 634990
Alignment:
| Q |
115 |
gagaggagattctagtgtgaactcttttgggttgagttcaaactctttcgtagttaagtcttagcatagttgacnnnnnnnntat--caaaattgcttgg |
212 |
Q |
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| T |
635173 |
gagaggagattctagtgtgaactcttttgggttgagttcaaactctttcgtagttaagtcttagcatagttgacaaaaaaaaaaaaccaaaattgcttgg |
635074 |
T |
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| Q |
213 |
ttggatgtcgtgatcgagctttgaacttcaacttttatacttgtgtgtatgagtttttaatgattattattattttgtctatct |
296 |
Q |
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| T |
635073 |
ttggatgtcgtgatcgagcttcgaacctcaacttttatacttgtgtttatgagtttttaatgattattattattttgtctatct |
634990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 432 - 536
Target Start/End: Complemental strand, 631484 - 631383
Alignment:
| Q |
432 |
cttagactacccgtgaagcaactctttcaacttcgacgacgcgtatgcaagtcatggaactctctcatatctaatcccaattttgccaagaagcacattc |
531 |
Q |
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| T |
631484 |
cttagactacctgtgaagcaactttttcgactt---aaacgcgtatgcaagtcatggaactctctcatctctaatcacaattttgccaagaagcatattc |
631388 |
T |
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| Q |
532 |
tcaac |
536 |
Q |
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| T |
631387 |
tcaac |
631383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 12132324 - 12132379
Alignment:
| Q |
472 |
gcgtatgcaagtcatggaactctctcatatctaatcccaattttgccaagaagcac |
527 |
Q |
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| T |
12132324 |
gcgtatgcaaatcctggaattctctcatatctgatcccaaatttgccaagaagcac |
12132379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 530
Target Start/End: Complemental strand, 7432861 - 7432808
Alignment:
| Q |
477 |
tgcaagtcatggaactctctcatatctaatcccaattttgccaagaagcacatt |
530 |
Q |
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| T |
7432861 |
tgcaagtcgtggaattctctgatctctaattccaattttgctaagaagcacatt |
7432808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 11729544 - 11729500
Alignment:
| Q |
251 |
acttgtgtgtatgagtttttaatgattattattattttgtctatc |
295 |
Q |
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| T |
11729544 |
acttgtgtgtctgaatttttaatgattattatcattttatctatc |
11729500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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