View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_6 (Length: 396)
Name: NF5378_low_6
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 51005036 - 51005397
Alignment:
| Q |
16 |
atgaaaaacttcgtcataagaaattttaaatgtgtaaagaactaataatatcattcattttaaaataaccagtgaaaaagttggaaataccatccagaag |
115 |
Q |
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| T |
51005036 |
atgaaaaacttcgtcataagaaattttaaatgtgtaaagaactaattatttcatttattttaaaataaccagtgaaagagttggaaataccatccagaag |
51005135 |
T |
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| Q |
116 |
atgcttcatttgtaaaattatgtgttgattctaacttgatgtcttgatgttacataagatgaaatttttaagtgatttctttagagaatctgcatgggaa |
215 |
Q |
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| T |
51005136 |
atgcttcatttgtaaaattatgtgttgattctaa--------cttgatgttacataagatgaaatttttaagtgatttctttagagaatctgcatgggaa |
51005227 |
T |
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| Q |
216 |
ttttaccacacattatatctcccagtatttcaaggaggaaaggtaaac--aag---nnnnnnnnctttggtaaac-aaattgaattttgaacatacaaga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||| |
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| T |
51005228 |
ttttaccacacattatatctcccagtatttcaaggaggaaagttaaacttaagtttttttttttctttggtaaacaaaattgaattttgaacatacaaga |
51005327 |
T |
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| Q |
310 |
ttttagctgctctgttacattgtttgtcatggatctgttagtgattttaatgtgtttcacatttcaatat |
379 |
Q |
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| T |
51005328 |
ttttagctgctctgttaaattgtttgtcatgtttctgttagtgattttaatgtgtttcacatttcaatat |
51005397 |
T |
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