View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_7 (Length: 395)
Name: NF5378_low_7
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_7 |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0173 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 56 - 382
Target Start/End: Original strand, 95314 - 95639
Alignment:
| Q |
56 |
aactccctaattaaccaacctagtaagtagtaactatagtttattttacctatnnnnnnnnnnnnnnnnttcgaaattcaaattatttcttcggggtttt |
155 |
Q |
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| T |
95314 |
aactccctaattaaccaacctagtaagtagtaactatagtttattttacctataaaaacaaaatgaaaattcaaaatccaaattatttcttcgag-tttt |
95412 |
T |
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| Q |
156 |
aacgttctcctctatctctcttcattttccatttcacattcacaaattctctttcttctgtgaatttcaacaaactttttgttcggttttgattccgatt |
255 |
Q |
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| T |
95413 |
aacgttctcctctctctctcttcattttccatttcacattcagaaattttctttcttctgtgaatttcaacaaactttttcttcggttttgattccgatt |
95512 |
T |
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| Q |
256 |
cttgtttttgatgaaaacgaattaaagttttgtgtcacgacgtcgtttccggaaggttgaagtcggagaagaacgaagcgacgccgtcacgagcacgtgt |
355 |
Q |
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| T |
95513 |
cttgtttttgatgaaaacgaattaaagttttgcgtcacgacgtcgtttccggaaggttgaagtcggagaagaacgaagtgacgccgtcatgagcacgtgt |
95612 |
T |
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| Q |
356 |
aatcggtggcggtggagaaggagtatg |
382 |
Q |
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| T |
95613 |
aatcggtggcggtggagaaggagtatg |
95639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0173 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 165 - 382
Target Start/End: Original strand, 19696 - 19929
Alignment:
| Q |
165 |
ctctatctctcttcattttccatttcacattcacaaattctctttcttctgtgaatttcaacaaactttttgtt-----------cggttttgattccga |
253 |
Q |
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| T |
19696 |
ctctctctctcttcattttccatttcacattcacaaattctctttcttctgtgaatttcagctaactcttttttttttttttttccggttttgattccga |
19795 |
T |
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| Q |
254 |
ttcttgtttttgatgaaaacgaattaaagttttgtgtcacgacgtcgtttccggaaggttgaagtcggagaagaacgaag------cgacgccgtcacga |
347 |
Q |
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| T |
19796 |
ttcttgtttttgatgaaaa-gaattacggttttgtgttacgacgtcgttttcggaaggtcgaagtcggagaagaacgaagcgacaccgacgccgtcacta |
19894 |
T |
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| Q |
348 |
gcacgtgtaatcggtggcggtggagaaggagtatg |
382 |
Q |
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| T |
19895 |
gcacatgtaattggtggcggtggagaaggagtatg |
19929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 13010069 - 13010212
Alignment:
| Q |
243 |
tttgattccgattcttgtttttgatgaaaacgaattaaagttttgtgtcacgacgtcgtttccggaaggttgaagtcggagaagaacgaagcgacg---- |
338 |
Q |
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| T |
13010069 |
tttgattccgattcttgtttttgatgaaaa-gaattacagtattgtgttacgacgtcgttttcggaaggtcgaagtcggagaagaacgaagcgacgccga |
13010167 |
T |
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| Q |
339 |
--ccgtcacgagcacgtgtaatcggtggcggtggagaaggagtatg |
382 |
Q |
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| T |
13010168 |
caccgtcactagcacatgtaatcggtggcggtgg-gaaggagtatg |
13010212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 13138254 - 13138222
Alignment:
| Q |
22 |
tgttaactttaatatataagaagatgataaatt |
54 |
Q |
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| T |
13138254 |
tgttaactttaatatataagaagataataaatt |
13138222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 19744656 - 19744624
Alignment:
| Q |
22 |
tgttaactttaatatataagaagatgataaatt |
54 |
Q |
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| T |
19744656 |
tgttaactttaatatataagaagataataaatt |
19744624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 19795150 - 19795182
Alignment:
| Q |
22 |
tgttaactttaatatataagaagatgataaatt |
54 |
Q |
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| T |
19795150 |
tgttaactttaatatataagaagataataaatt |
19795182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 18485742 - 18485774
Alignment:
| Q |
22 |
tgttaactttaatatataagaagatgataaatt |
54 |
Q |
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| T |
18485742 |
tgttaactttaatatataagaagataataaatt |
18485774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 44836529 - 44836497
Alignment:
| Q |
15 |
acttaaatgttaactttaatatataagaagatg |
47 |
Q |
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| T |
44836529 |
acttacatgttaactttaatatataagaagatg |
44836497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 33374431 - 33374403
Alignment:
| Q |
22 |
tgttaactttaatatataagaagatgata |
50 |
Q |
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| T |
33374431 |
tgttaactttaatatataagaagatgata |
33374403 |
T |
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