View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5378_low_8 (Length: 380)
Name: NF5378_low_8
Description: NF5378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5378_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 42632578 - 42632222
Alignment:
| Q |
15 |
aaattaaatgacttgaccctgtactccaatctttctctatctctcactattcacgtaatggccaagtttctcttaacaccggtt--------ttccaaaa |
106 |
Q |
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| T |
42632578 |
aaattaaatgacttgaccctgtactccaatctctctctatctctctctattcacgtaatggccaagtttctcttaacaccggttcaccggttttccaaaa |
42632479 |
T |
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| Q |
107 |
agccacccggccggtccgagccaatactgaaaatgacacagcgttgaatgtaaagtaaccacgtacaaggtttgacttgtaaaatacttaactccaaatt |
206 |
Q |
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| T |
42632478 |
agccacccggccggtccgagccaatactgaaaatgacacagcgttgaatgtaaagtaaccacgtacaaggtttgacttgtaaaatacttaactccaaatt |
42632379 |
T |
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| Q |
207 |
tgtctcattgtagatagcatttaatgcaaaattgtcacattagagtgatagtgaccaaatctcaatctcatctccaactccataaatcattccatttcat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42632378 |
tgtctcattgtagatagcatttaatgcaaaattgtcacattagagtgatagtgaccaaatctcaatctcatctccaactccataaatcattccatttcat |
42632279 |
T |
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| Q |
307 |
tcattcattcttcatccccaaatcttcactctctctttctcaactttccaaaatgggt |
364 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42632278 |
tcattcattcttcatccccaaatcttcactctctc-ttctcaactttccaaaatgggt |
42632222 |
T |
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