View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5379-Insertion-4 (Length: 1005)
Name: NF5379-Insertion-4
Description: NF5379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5379-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 49008771 - 49009121
Alignment:
| Q |
7 |
accatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatgaaaaggtggcataca |
106 |
Q |
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| T |
49008771 |
accatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatgaaaaggtggcataca |
49008870 |
T |
|
| Q |
107 |
agttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttggacagactcgaaacacaatgtcagaagtcccattgttgt |
206 |
Q |
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| T |
49008871 |
agttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttggacagactcgaaacacaatgtcagaagtcccattgttgt |
49008970 |
T |
|
| Q |
207 |
gactagcctcaactcagaattaacacccccatagagcttaaagtgtctccttgaatattaatgattgcttaggttaagatgaggatattatgcttctacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008971 |
gactagcctcaactcagaattaacacccccatagagcttaaagtgtttccttgaatattaatgattgcttaggttaagatgaggatattatgcttctacc |
49009070 |
T |
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| Q |
307 |
aatccttgatttcatttttctcaattcatgaccagatcattacttgatatt |
357 |
Q |
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| T |
49009071 |
aatccttgatttcatttttctcaattcatgaccagatcattacttgatatt |
49009121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 455 - 948
Target Start/End: Original strand, 49009180 - 49009636
Alignment:
| Q |
455 |
gttaatctccaaatcatagaaaaactcaccaacattacattgttttaaatgtaactcgactttggttgcttaggcaaagtctcatgttcaaacagtataa |
554 |
Q |
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| T |
49009180 |
gttaatctccaaatcatagaaaaactcaccaacattacattgttttaaatgtaactcgactttggttgcttaggcaaagtctcatgttcaaacagtataa |
49009279 |
T |
|
| Q |
555 |
atttaaaaaatacagttggaggggagacagacaccataaaaaacgacgagccaaaattcatgataaataaacaaaatagcaaaatttccttccatatcca |
654 |
Q |
| |
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| T |
49009280 |
atttaaaaaatacagttggaggg-----------cataaaaaacgacgagccaaa-ttcatcataaataaacaaaatagcaaaatttccttccatatcca |
49009367 |
T |
|
| Q |
655 |
tttgaatatcttagctttacttatgataattacaccctcttgttgtcattgagcatcttggagatcctcatagtgattacaaccttcttcaactctcttt |
754 |
Q |
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| T |
49009368 |
tttgaatatcttagctttacttatgataattacaccctcttgttgtcattgagcatcttggagatcctcatagtgattacaaccttcttcaactctcttt |
49009467 |
T |
|
| Q |
755 |
tggcatcattagatatttctcaatataatggtgtaactgaatcccaccaagaaagaaaagccagaaaggagagaaaacatgatttgctaaatgacatgca |
854 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
49009468 |
tggcatcattagatatttctcaatataatg--------------------gaaagaaaagccagaaa-gagagaaatcatgatttgctaaatgacatgca |
49009546 |
T |
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| Q |
855 |
caacaattttcttctctacatatacagaaaataagatgtccccttgttaaacaatatgcaatttgccctcctgcttcctgggctctaaggaaca |
948 |
Q |
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| T |
49009547 |
caacaattttcttctctacatatacagaaa--tagatgt-cccttgttaaac-atattcaattttgcctcctgcttctagggctctaaggaaca |
49009636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 9947920 - 9947862
Alignment:
| Q |
19 |
gccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtt |
77 |
Q |
| |
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| T |
9947920 |
gccaacattactcctatcaaagggtttcatgtcagtgttatcccaaacaagttggtgtt |
9947862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 8958637 - 8958694
Alignment:
| Q |
35 |
ttgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
92 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||| |
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| T |
8958637 |
ttgaagggttccatgtcagtgttatcccaaacaagttggtattcaatgagaagaatga |
8958694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 8975049 - 8975089
Alignment:
| Q |
37 |
gaagggttccatgttagtgttatcccaaacaagttggtgtt |
77 |
Q |
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| T |
8975049 |
gaagggttccatgttagagttatcccaaataagttggtgtt |
8975089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 25927991 - 25927947
Alignment:
| Q |
48 |
tgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
92 |
Q |
| |
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| T |
25927991 |
tgttagtgttatcccaaacaagttagtgtttaatgagaagaatga |
25927947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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