View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5379-Insertion-5 (Length: 981)
Name: NF5379-Insertion-5
Description: NF5379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5379-Insertion-5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 331 - 940
Target Start/End: Original strand, 38946141 - 38946741
Alignment:
| Q |
331 |
ttagttaagtacgtatgaagtttttctattatttttatctgaatgtaaactaacatatcgaaaattcatggtttggcgaaagaagtgatgcactagtttt |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38946141 |
ttagttaagtacgtatgaagtttttctattatttttatctgaatgtaaactaacatatcgaaaattcatggtttggcgaaagaagtgatgcactagtttt |
38946240 |
T |
|
| Q |
431 |
ttaataaagctataaaaatgggtttggctgatnnnnnnnttaacacatgaatatgtgnnnnnnnnnnnnaagaacatgaatatgtgtttttaataatgac |
530 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38946241 |
t-aataaagctataaaaatgggtttggctgataaaaaa-ttaacacatgaatatgtgtttttttttt--aagaacatgaatatgtgtttttaataatgac |
38946336 |
T |
|
| Q |
531 |
ataagaaacaataacaaatgaaaaatgtaaattaacatatgatgggttgttaatgagatgacgtgatgcaacgagttttatgaacagaaccgaaagcaga |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38946337 |
ataagaaacaataacaaatgaaaaatgtaaattaacatatgatgggttgttaatgagatgacgtgatgcaacgagttttatgaacagaaccgaaagcagc |
38946436 |
T |
|
| Q |
631 |
aagaatacaagcaattcagaaattgagaagnnnnnnnnnnnnnnnnnnnnnngggatggagaattgtttcactggtgaaacaaaaatagggataagagag |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38946437 |
aagaatacaagcaattcagaaattgagaagaaaaaaaaaaacgagaaaaaaagggatggagaattgtttcactggtgaaacaaaaatagggataaaagag |
38946536 |
T |
|
| Q |
731 |
taattattcaattaaaatgttactttccattacatccgccccaaattagggggataaaaaatagaagggaaattggtgggtatgatatggaatagattcc |
830 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
38946537 |
taattattcaattaaaatgttactttccattacatccgccccaaatt-gggggataaaaaatagaa-ggaaattg--tggtatgatatggaatagattcc |
38946632 |
T |
|
| Q |
831 |
atcgtattccatgatattccattcattttaaacaaatccaag-aataaagcatggactctataccactccatttcattttcaatccatcatattccatcg |
929 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
38946633 |
atcttattccatgatattccattcattttaaacaaatccaagcaatgaagcat-gactctataccattccatttca-ttccaatccatcatattccattc |
38946730 |
T |
|
| Q |
930 |
attcaaacata |
940 |
Q |
| |
|
|| |||||||| |
|
|
| T |
38946731 |
atccaaacata |
38946741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 38945821 - 38946049
Alignment:
| Q |
7 |
aaaaattcattttaaggctatgtttaaaatgctatgtttgaattgatggaataaagctgaatgaaacatgatggaatggagtgaaatggaacaaaaactt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38945821 |
aaaaattcattttaaggctatgtttaaaatgttatgtttgaattgatggaacaaagcggaatgaaacatgatggaatggagcgaaatggaacaaaaactt |
38945920 |
T |
|
| Q |
107 |
catttcattgtttaggtatttgatgatggaacagaacaaactttttattctattgattggaaagtggaaggaatgaaatgtattatgacattttatttca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38945921 |
catttcattgtttaggtatttgatgatggaacagaacaaactttttattctattgattggaaagtggaaggaatgaaatgtattatgacattttatttca |
38946020 |
T |
|
| Q |
207 |
atattacccttatataactattaggtaga |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38946021 |
atattacccttatataactattaggtaga |
38946049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 15024119 - 15023966
Alignment:
| Q |
77 |
atggaatggagtgaaatggaacaaaaacttcatttcattgtttaggtatttgatgatggaacagaacaaactttttattctattgattggaaagtggaag |
176 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||| |||||||||||||| | || |||| |||||||||||| |||| |||| || ||||||| | |
|
|
| T |
15024119 |
atggaatggagcggaatggaacaaaaactgcattctattgtttaggtattgtacgacggaatggaacaaacttttcattccattgtttagaaagtgaccg |
15024020 |
T |
|
| Q |
177 |
gaatgaaatgtattatgacatt-ttatttcaatattacccttatataactatta |
229 |
Q |
| |
|
||||| ||| ||||||| ||| ||||| || |||||||||| ||||||||||| |
|
|
| T |
15024019 |
gaatggaatagattatgatattcttattccattattacccttgtataactatta |
15023966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 684 - 940
Target Start/End: Complemental strand, 15004415 - 15004164
Alignment:
| Q |
684 |
ggatggagaattgtttcactggtgaaacaaaaatagggataagagagtaattattcaattaaaatgttactttccattacatccgccccaaatt-agggg |
782 |
Q |
| |
|
||||| |||||| |||||| | ||||| |||||||| ||||| || |||||||| |||||||||||| | |||||||| || | ||| ||||| ||||| |
|
|
| T |
15004415 |
ggatgaagaattatttcaccgatgaaataaaaatagagataaaag--taattatttaattaaaatgtttcattccattaaatacaccctaaattgagggg |
15004318 |
T |
|
| Q |
783 |
gataaaaaatagaagggaaattggtgggtatgatatggaatagattccatcgtattccatgatattccattcattttaaacaaatccaag-aataaagca |
881 |
Q |
| |
|
| ||||||| |||| || ||||| |||| ||||||| |||||||| || |||||| ||| |||||||||| |||||||| || |||| |||| |
|
|
| T |
15004317 |
aaggaaaaataaaaggaaac--ggtgg-tatgggatggaatggattccattgtgttccataccatttcattcatttttaacaaatcaaaacaatagagca |
15004221 |
T |
|
| Q |
882 |
tggactctataccactccatttcattttcaatccatcatattccatcgattcaaacata |
940 |
Q |
| |
|
|| |||||||| || |||||||||| || |||||||||||||||| ||||||||||| |
|
|
| T |
15004220 |
tg-actctatatcataccatttcattc-cactccatcatattccatcaattcaaacata |
15004164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 683 - 778
Target Start/End: Complemental strand, 15021929 - 15021836
Alignment:
| Q |
683 |
gggatggagaattgtttcactggtgaaacaaaaatagggataagagagtaattattcaattaaaatgttactttccattacatccgccccaaatta |
778 |
Q |
| |
|
|||||| |||||| |||||||| ||||| ||||||||||||| | |||||||||| |||||||||||| | |||||||| || | |||||||||| |
|
|
| T |
15021929 |
gggatgaagaattatttcactgatgaaataaaaatagggata--aaagtaattatttaattaaaatgtttcattccattaaatacaccccaaatta |
15021836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 16633664 - 16633798
Alignment:
| Q |
329 |
aattagttaagtacgtatgaagtttttctattatttttatctgaa-tgtaaactaacatatcgaaaattcatggtttggcgaaagaagtgatgcactagt |
427 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
16633664 |
aattagtttagtatgtatgaagtttttctattacttttatctgaaatgtaaactaacatatcgaaaattcatggtttgggagaagaagtgatgcacttgt |
16633763 |
T |
|
| Q |
428 |
tttttaataaagctataaaaatgggtttggctgat |
462 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
16633764 |
tttttaataaagacataaaaatgggtttggctgat |
16633798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 16633875 - 16633948
Alignment:
| Q |
526 |
atgacataagaaacaataacaaatgaaaaatgtaaattaacatatgatgggttgttaatgagatgacgtgatgc |
599 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
16633875 |
atgacataagaaacaataacacatgaaaaatgtaaattatcatatgatgggttgttaatgagatgatgtgatgc |
16633948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 16633396 - 16633567
Alignment:
| Q |
65 |
gaatgaaacatgatggaatggagtgaaatggaacaaaaacttcatttcattgtttaggtatttgatgatggaacagaacaaactttttattctattgatt |
164 |
Q |
| |
|
|||||||| || ||||||||||| | ||| ||| ||||||||||||| | ||| ||||||| | | |||||| |||||||||||||| |||| || |
|
|
| T |
16633396 |
gaatgaaagataatggaatggagcggaatagaataaaaacttcattttagaatttgggtattttacaacataacagatcaaactttttattccattgttt |
16633495 |
T |
|
| Q |
165 |
ggaaagtggaaggaatgaaatgtattatgac-attttatttcaatattacccttatataactattaggtaga |
235 |
Q |
| |
|
|||||||| |||||||||| |||||| || |||||||||| |||| || |||||||||||||||||||| |
|
|
| T |
16633496 |
aaaaagtggatggaatgaaatatattataacttttttatttcattattgcctttatataactattaggtaga |
16633567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 684 - 784
Target Start/End: Original strand, 16634091 - 16634191
Alignment:
| Q |
684 |
ggatggagaattgtttcactggtgaaacaaaaatagggataagagagtaattattcaattaaaatgttactttccattacatccgccccaaattaggggg |
783 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||| || | ||||||||||| | ||||||||| |||| |
|
|
| T |
16634091 |
ggatcgagaattgtttcatcgatgaaacaaaaataatgataaaagagtaattattcaattaaaatcttccattccattacatacatcccaaattaagggg |
16634190 |
T |
|
| Q |
784 |
a |
784 |
Q |
| |
|
| |
|
|
| T |
16634191 |
a |
16634191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University