View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5379-Insertion-7 (Length: 597)
Name: NF5379-Insertion-7
Description: NF5379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5379-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 39581786 - 39582118
Alignment:
| Q |
8 |
aatatatgtttttaggtaatataattaatttatatataacgcgttcagtatcagtaacgttgatatcttatccacaactgatgaagtatatgtcttggtc |
107 |
Q |
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| T |
39581786 |
aatatatgtttttaggtaatataattaatttatatataacacgttcagtatcagtaacgttgatatcttatccacaactgatgaagtatatgtcttggtc |
39581885 |
T |
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| Q |
108 |
atcgtattcaagtgaggcgaattgtaatgatgagaattgaagaaaattactaaaatgatacagtgttgaattgccattggggagagagttcaaaattgtg |
207 |
Q |
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| T |
39581886 |
atcgtatccaagtgaggcgaactgtaatgatgagaattgaagaaaattactaaaatgatacagtgttgaattgccgttggggagagaattc-aaattgtg |
39581984 |
T |
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| Q |
208 |
tttgtttgagtgatcttttaatctttgattgcaaatcttagacgtagggaatgggagaagtgaaggagaaccaatgaagaagacttagataagttgagga |
307 |
Q |
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| T |
39581985 |
tttgtttgaatgatcttttaatctttgattgcaaatcttagaagtagggaatgggagaagtgaaggagaaccaatgaagaagacttagataagttgagga |
39582084 |
T |
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| Q |
308 |
agacttgaggtgcggactgtggttatgtcgacag |
341 |
Q |
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| T |
39582085 |
agacttgaggtgcggactgtggttatgtcgacag |
39582118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 412 - 597
Target Start/End: Original strand, 39582189 - 39582374
Alignment:
| Q |
412 |
aacaactactggaaccattagagacctgaaaaatgaaaaatctctgttaaaacgtgattggttggttcggattatagatgcacttaatataataatttat |
511 |
Q |
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| T |
39582189 |
aacaactactggaaccattagagacctgaaaaatgaaaaatccctgttaaaacgtgattggttggtttggattatagatgcacttaatataataatttat |
39582288 |
T |
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| Q |
512 |
tttctatggagactagctagagacatccttcctactagatagatgtagaccgaagcgaaaaggattgagtatagacaccatttgcc |
597 |
Q |
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| T |
39582289 |
tttctatggagactagctagagatatccttcctactagatagatgtagaccgaagcgaaaaggattgagtatagacaccatttgcc |
39582374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 39525432 - 39525598
Alignment:
| Q |
51 |
ttcagtatcagtaacgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattg---a |
147 |
Q |
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| T |
39525432 |
ttcagtaacagtaacgttgctatctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatgagaattgaata |
39525531 |
T |
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| Q |
148 |
agaaaa-ttactaaaatgatacagtgttgaattgccattggggagagagttcaaaattgtgtttgtttga |
216 |
Q |
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| T |
39525532 |
agaaaagcaagtaagatgatagagtgttgaattgccat---ggagagagttgaaaattatgtttgtttga |
39525598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 39521945 - 39522034
Alignment:
| Q |
64 |
acgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaagaaaa |
153 |
Q |
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| T |
39521945 |
acgtcgatatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagaaaa |
39522034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 39544741 - 39544887
Alignment:
| Q |
70 |
atatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaag----aaaattactaaaatga |
165 |
Q |
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| T |
39544741 |
atatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaaatga |
39544840 |
T |
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| Q |
166 |
tacagtgttgaattgccattggggagagagttcaaaattgtgtttgt |
212 |
Q |
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| T |
39544841 |
tagtgtgttgaactgccattggagagagagttgataattgtgtttgt |
39544887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 39581194 - 39581296
Alignment:
| Q |
127 |
aattgtaatgatgagaattgaagaaaa----ttactaaaatgatacagtgttgaattgccattggggagagagttcaaaattgtgtttgtttgagtgatc |
222 |
Q |
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| T |
39581194 |
aattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccat-ggggagagagttgataattgtgtttgtttgaatgatt |
39581292 |
T |
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| Q |
223 |
tttt |
226 |
Q |
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|||| |
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| T |
39581293 |
tttt |
39581296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 513
Target Start/End: Original strand, 39581544 - 39581600
Alignment:
| Q |
457 |
gttaaaacgtgattggttggttcggattatagatgcacttaatataataatttattt |
513 |
Q |
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| T |
39581544 |
gttaaaacatgattggttggtttggattttcgacgcacttattataataatttattt |
39581600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 39576590 - 39576677
Alignment:
| Q |
64 |
acgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaagaa |
151 |
Q |
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| T |
39576590 |
acgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgtagtgatgagaattgaagaa |
39576677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 513
Target Start/End: Original strand, 39576961 - 39577042
Alignment:
| Q |
432 |
gagacctgaaaaatgaaaaatctctgttaaaacgtgattggttggttcggattatagatgcacttaatataataatttattt |
513 |
Q |
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| T |
39576961 |
gagacatgaaaaaggaaagctctacgttaagacgtgattggttagttaggattttagatacatttattataataatttattt |
39577042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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