View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5379_high_2 (Length: 606)

Name: NF5379_high_2
Description: NF5379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5379_high_2
NF5379_high_2
[»] chr3 (9 HSPs)
chr3 (231-377)||(5565257-5565403)
chr3 (386-519)||(5565170-5565302)
chr3 (303-419)||(31896518-31896633)
chr3 (421-501)||(14175288-14175364)
chr3 (303-419)||(31945875-31945990)
chr3 (285-338)||(13539565-13539618)
chr3 (303-419)||(31912227-31912342)
chr3 (426-494)||(13539487-13539552)
chr3 (303-419)||(31688234-31688349)
[»] chr8 (1 HSPs)
chr8 (466-557)||(43618606-43618697)
[»] chr2 (1 HSPs)
chr2 (20-186)||(274714-274876)
[»] chr7 (1 HSPs)
chr7 (462-509)||(7854246-7854293)
[»] scaffold0007 (1 HSPs)
scaffold0007 (408-486)||(257658-257735)
[»] scaffold0003 (2 HSPs)
scaffold0003 (303-402)||(42747-42845)
scaffold0003 (303-419)||(36571-36686)
[»] chr6 (1 HSPs)
chr6 (303-402)||(27444516-27444614)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 231 - 377
Target Start/End: Complemental strand, 5565403 - 5565257
Alignment:
Q  231 atcaatgaatgattcagtattagaaatgaggaatacaaaaactgaaaataacaattaacgttgcaaaataaaagaagcttctgacagcgaccccgacgcg 330  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||    
T  5565403 atcaatgaatgattcagtattagaaatgaggaatacaaaagcagaaaataacaattaaccttgcaaaataaaagaagcttctgacagtgacatcgacacg 5565304  T
Q  331 ttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactc 377  Q
     ||||||||||||||| |||| ||| ||||| |||||||| ||||||    
T  5565303 gtgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactc 5565257  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 386 - 519
Target Start/End: Complemental strand, 5565302 - 5565170
Alignment:
Q  386 tgaagagcgaattccgatgcgatggtcaacgatggtggtgcaactccggcgtggtggaaagcaagtgggttttcggagaggatgaagagatgaagacgat 485  Q
    ||||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||| |||||||| ||||| ||    
T  5565302 tgaagagcgaattccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtgggtttt-gtagaggacgaagagattaagactat 5565204  T
Q  486 gatgcttttactttagtggaagaaggctaaaaaa 519  Q
    ||||||||||||||||||| |||||||| |||||    
T  5565203 gatgcttttactttagtgggagaaggctgaaaaa 5565170  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 31896518 - 31896633
Alignment:
Q  303 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 402  Q
    |||||||||| |||||||| | |||||| |||||||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||  |||||||    
T  31896518 agaagcttctaacagcgacactgacgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31896616  T
Q  403 tgcgatggtcaacgatg 419  Q
     ||| ||||||||||||    
T  31896617 cgcggtggtcaacgatg 31896633  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 501
Target Start/End: Original strand, 14175288 - 14175364
Alignment:
Q  421 tggtgcaactccggcgtggtggaaagcaagtgggttttcggagaggatgaagagatgaagacgatgatgcttttactttag 501  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||| ||||| ||||||||   ||||||||||||||||    
T  14175288 tggtgcaactccggcgtggtggaaagcaaatgggtttt-gtagaggacgaagaaatgaagac---gatgcttttactttag 14175364  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 31945875 - 31945990
Alignment:
Q  303 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 402  Q
    |||||||||| |||||||| | | |||| |||||||||||| || |||||||||| ||||| |||||| |||||| || ||| | ||||||  |||||||    
T  31945875 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcgcggttaagagcatattccga 31945973  T
Q  403 tgcgatggtcaacgatg 419  Q
     ||| ||||||||||||    
T  31945974 cgcggtggtcaacgatg 31945990  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 13539618 - 13539565
Alignment:
Q  285 ttaacgttgcaaaataaaagaagcttctgacagcgaccccgacgcgttgaagag 338  Q
    ||||| |||||||||||||||||||||||||||| | ||||||||| |||||||    
T  13539618 ttaaccttgcaaaataaaagaagcttctgacagcaaacccgacgcgatgaagag 13539565  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 31912227 - 31912342
Alignment:
Q  303 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 402  Q
    |||||||||| |||||||| | | |||| |||||||||||| || |||||||||| ||||| |||||| |||||| ||  || | ||||||  |||||||    
T  31912227 agaagcttctaacagcgacactggcgcgatgaagagcgaat-ccgacgcggtgattaacaagggtggtgcaactccggcacggttaagagcatattccga 31912325  T
Q  403 tgcgatggtcaacgatg 419  Q
     ||| ||||||||||||    
T  31912326 cgcggtggtcaacgatg 31912342  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 494
Target Start/End: Complemental strand, 13539552 - 13539487
Alignment:
Q  426 caactccggcgtggtggaaagcaagtgggttttcggagaggatgaagagatgaagacgatgatgctttt 494  Q
    |||||||||| ||||| |||||| |||||||| |  ||||||||||||||||||||| |||||||||||    
T  13539552 caactccggcatggtg-aaagcatgtgggtttgc--agaggatgaagagatgaagacaatgatgctttt 13539487  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 31688349 - 31688234
Alignment:
Q  303 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 402  Q
    |||||||||| |||||||| | | |||| ||||||||||| ||  |||||||||| ||||| |||||| |||||| |  ||| | ||||||  |||| ||    
T  31688349 agaagcttctaacagcgacactggcgcgatgaagagcgaa-tctgacgcggtgattaacaagggtggtgcaactccgacgcggttaagagcatattctga 31688251  T
Q  403 tgcgatggtcaacgatg 419  Q
     ||| ||||||||||||    
T  31688250 cgcggtggtcaacgatg 31688234  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 466 - 557
Target Start/End: Original strand, 43618606 - 43618697
Alignment:
Q  466 gatgaagagatgaagacgatgatgcttttactttagtggaagaaggctaaaaaattaacgaaatgagggaataagaagaagggttttcgtgt 557  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||||||||||| ||||    
T  43618606 gatgaagagatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaagcaaatgagggcataagaagaagggtttttgtgt 43618697  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 274876 - 274714
Alignment:
Q  20 ataaacaccagaaaaacttcccacatcaacgctggagtaacnnnnnnnntccttctgaagtagtaagtaggtaaagattacatacaatttgtagaagtaa 119  Q
    ||||||||| ||| | ||||||||||||| |||||||||||        |||| | ||||||| ||| || ||| ||||||| ||||||| || ||        
T  274876 ataaacaccggaacagcttcccacatcaatgctggagtaacaaaaaaaatcctccagaagtagcaagcagataaggattacaaacaatttatacaa---- 274781  T
Q  120 atgaatgattagaagatatacctcatcaccaggcaaggtgctcgcaccagtaatggtgatatcttgt 186  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  274780 atgaatgattggaagatatacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt 274714  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 509
Target Start/End: Complemental strand, 7854293 - 7854246
Alignment:
Q  462 agaggatgaagagatgaagacgatgatgcttttactttagtggaagaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7854293 agaggatgaagagatgaagacgatgatgcttttactttagtgggagaa 7854246  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 486
Target Start/End: Complemental strand, 257735 - 257658
Alignment:
Q  408 tggtcaacgatggtggtgcaactccggcgtggtggaaagcaagtgggttttcggagaggatgaagagatgaagacgatg 486  Q
    ||||||||||  |||||  ||||||||||||| ||||||||| |||||||| | |||||| ||||| ||||||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggtttt-gtagaggacgaagaaatgaagacgatg 257658  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 402
Target Start/End: Original strand, 42747 - 42845
Alignment:
Q  303 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 402  Q
    |||||||||| |||||||| | |  ||| | |||||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||  |||||||    
T  42747 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 42845  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 36571 - 36686
Alignment:
Q  303 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 402  Q
    |||||||||| |||||||| | | |||| ||||||||||| ||| || ||||||| |||||||||| | |||||| || ||| | ||||||  ||||| |    
T  36571 agaagcttctaacagcgacactggcgcgatgaagagcgaa-tccgacacggtgattaacaacggtgatgcaactccggcgcggttaagagcatattccaa 36669  T
Q  403 tgcgatggtcaacgatg 419  Q
     ||| || |||||||||    
T  36670 cgcggtgatcaacgatg 36686  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 402
Target Start/End: Complemental strand, 27444614 - 27444516
Alignment:
Q  303 agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggttcaactctggtgcgatgaagagcgaattccga 402  Q
    |||||||||| |||||||| | |  ||| | |||||||||| || |||||||||| ||||||||||||||||||| || ||| | ||||||  |||||||    
T  27444614 agaagcttctaacagcgacactggtgcgataaagagcgaat-ccgacgcggtgattaacaacggtggttcaactccggcgcggttaagagcatattccga 27444516  T

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