View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5379_high_3 (Length: 551)
Name: NF5379_high_3
Description: NF5379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5379_high_3 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 49007878 - 49008428
Alignment:
| Q |
1 |
tcatcagagcaagaaacaagatcgtggtgtgtgaagacaagaaccgaacacttgctactcaagtggataacttggacagaataaaagttgttgcgggtgt |
100 |
Q |
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| T |
49007878 |
tcatcagagcaagaaacaagatcgtggtgtgtgaagacaagaaccgaacacttgctactcaagtggataacttggacagaataaaagttgttgcgggtgt |
49007977 |
T |
|
| Q |
101 |
tttcatatcaaatagttctgaggatataacatattacattcaaactaagtttccatctannnnnnngaatccaattaatggagaacttatcaaggatttc |
200 |
Q |
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| T |
49007978 |
tttcatatcaaatagttctgaggatataacatattacattcaaactaagtttccatctatttttttgaatccaattaatggagaacttatcaaggatttc |
49008077 |
T |
|
| Q |
201 |
attaagtgcaatactaatccgaaagcaagcatgcaatttaataaaactgttttaggtacaaaaccagcaccacgtgtggatagttatagctcaagagggc |
300 |
Q |
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| T |
49008078 |
attaagtgcaatactaatccaaaagcaagcatgcaatttaataaaactgttttaggtacaaaaccagcaccaagtgtggatagttatagctcaagagggc |
49008177 |
T |
|
| Q |
301 |
catcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatgttccagcaacagagctgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008178 |
catcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatgttccagcaacagagctgca |
49008277 |
T |
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| Q |
401 |
attccagaacaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcac |
500 |
Q |
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| T |
49008278 |
attccagaacaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcac |
49008377 |
T |
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| Q |
501 |
ccttgttggagcccagcagccattagatcggctatgatgacaacatcagac |
551 |
Q |
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| T |
49008378 |
ccttgttggagcccagcagccattagatcggctatgatgacaacatcagac |
49008428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 415 - 492
Target Start/End: Complemental strand, 21687100 - 21687023
Alignment:
| Q |
415 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
492 |
Q |
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| T |
21687100 |
tctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgcttttaaaag |
21687023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 373
Target Start/End: Complemental strand, 21687235 - 21687136
Alignment:
| Q |
274 |
gtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcc |
373 |
Q |
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| T |
21687235 |
gtgtggatttttatagctcaaggggaccatcaaatagttgtccatatgtgttgaaacctgacatcactgctcctggtacatcaatcttagctgcatggcc |
21687136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 551
Target Start/End: Original strand, 8963150 - 8963283
Alignment:
| Q |
418 |
tcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccagc |
517 |
Q |
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||||||| ||||| || |||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||| |||| | || || ||||||||| | |
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| T |
8963150 |
tcaacaagttcaattttttaactggaacatctatgtcatgtcctcatgttgccggtgtaggagcacttttgaaaggagcacatgctgattggagcccgac |
8963249 |
T |
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| Q |
518 |
agccattagatcggctatgatgacaacatcagac |
551 |
Q |
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| T |
8963250 |
agctattaggtcggcaatgatgacaacatcagac |
8963283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 551
Target Start/End: Original strand, 8974543 - 8974679
Alignment:
| Q |
415 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcac-ccttg-ttggagc |
512 |
Q |
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|||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| ||||||||| |||| ||||| ||| ||||||| |
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| T |
8974543 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag--ctgcacatgttgattggagc |
8974640 |
T |
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| Q |
513 |
ccagcagccattagatcggctatgatgacaacatcagac |
551 |
Q |
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| T |
8974641 |
cctgcagctattaggtcagcaatgatgacaacatcagac |
8974679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 492
Target Start/End: Complemental strand, 8945937 - 8945860
Alignment:
| Q |
415 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
492 |
Q |
| |
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|||||||||| ||||| || |||| ||||||||| | ||||||||| || ||||| ||||||| |||||||||||||| |
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| T |
8945937 |
tcttcaacaagttcaaatttttaactggaacatctacgtcatgtcctcatgttgccggtgtaggagcacttttaaaag |
8945860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 8963019 - 8963120
Alignment:
| Q |
284 |
ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatgtt |
383 |
Q |
| |
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|||||| || |||||||||||| | |||||||||| ||| |||||||| ||||| ||||| || || || |||||||||| ||||||||| ||||||| |
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| T |
8963019 |
ttatagttctagagggccatcaaagagttgtccatatgtgttgaaacctgacattacagctcccggtacgtcaatcttagctgcatggcctccaaatgtt |
8963118 |
T |
|
| Q |
384 |
cc |
385 |
Q |
| |
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|| |
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| T |
8963119 |
cc |
8963120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 492
Target Start/End: Original strand, 8958133 - 8958210
Alignment:
| Q |
415 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
492 |
Q |
| |
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|||||||||| ||||| || ||||||||||||| ||| ||||||| || ||||||||||| || |||||||| |||| |
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| T |
8958133 |
tcttcaacaagttcaatgtgataagtggaacatctatggcatgtcctcatgttgcaggtgtcgcggcacttttgaaag |
8958210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 373
Target Start/End: Original strand, 8958005 - 8958094
Alignment:
| Q |
284 |
ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcc |
373 |
Q |
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|||||| ||||||||||| ||| |||||||||||| | | |||||||| |||||||| || || || ||| ||||||||| ||||||| |
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| T |
8958005 |
ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcc |
8958094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 34962886 - 34962792
Alignment:
| Q |
243 |
aaaactgttttaggtacaaaaccagcaccacgtgtggatagttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacat |
337 |
Q |
| |
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||||| ||||| || || ||||||||||| |||| ||| ||||| ||||||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
34962886 |
aaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctgacat |
34962792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 551
Target Start/End: Complemental strand, 34962715 - 34962581
Alignment:
| Q |
417 |
ttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccag |
516 |
Q |
| |
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|||| ||| ||||| ||| ||||||||||||| ||| | || || || ||||||||||| || || ||||| |||| | |||| | ||||||||||| |
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| T |
34962715 |
ttcagcaaattcaatttgataagtggaacatctatggcgtgccctcatgttgcaggtgtcgcggcgcttttgaaaggagtgcatagtgattggagcccag |
34962616 |
T |
|
| Q |
517 |
cagccattagatcggctatgatgacaacatcagac |
551 |
Q |
| |
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|||| ||| | ||||| || ||||||||||||||| |
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| T |
34962615 |
cagcaattcggtcggcaataatgacaacatcagac |
34962581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 492
Target Start/End: Complemental strand, 19375811 - 19375734
Alignment:
| Q |
415 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
492 |
Q |
| |
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|||||||||| ||||| ||| ||||||||||||| ||| ||||||| |||||||||||| ||||| |||||| |||| |
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| T |
19375811 |
tcttcaacaagttcaatttgataagtggaacatctatggcatgtcctcacgttgcaggtatagcattacttttgaaag |
19375734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 19375939 - 19375850
Alignment:
| Q |
284 |
ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcc |
373 |
Q |
| |
|
|||||| ||||||||||| ||| ||| |||||||||||| |||||||| |||||||| || | || ||| |||||||||| ||||||| |
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| T |
19375939 |
ttatagttcaagagggccttcaaataattgtccatttgtgttgaaacccgacatcactgctcttggtacatcaatcttagctgcatggcc |
19375850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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