View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5379_high_5 (Length: 338)

Name: NF5379_high_5
Description: NF5379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5379_high_5
NF5379_high_5
[»] chr7 (1 HSPs)
chr7 (1-322)||(49008456-49008777)
[»] chr8 (4 HSPs)
chr8 (62-243)||(8945531-8945712)
chr8 (34-231)||(8958330-8958527)
chr8 (46-231)||(8974752-8974937)
chr8 (32-146)||(8963342-8963456)
[»] chr1 (1 HSPs)
chr1 (32-243)||(34962314-34962525)
[»] chr2 (1 HSPs)
chr2 (3-231)||(21686706-21686934)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 49008456 - 49008777
Alignment:
Q  1 acagacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008456 acagacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatg 49008555  T
Q  101 caggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgaccc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  49008556 caggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcagccatcacgagatcgtcttttaacaattgttctaaccc 49008655  T
Q  201 ttctttggaccttaattacccttcttttatttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008656 ttctttggaccttaattacccttcttttatttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaat 49008755  T
Q  301 gttggagaggaaccaaccatct 322  Q
    ||||||||||||||||||||||    
T  49008756 gttggagaggaaccaaccatct 49008777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 8945712 - 8945531
Alignment:
Q  62 atcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgc 161  Q
    ||||||||||||||||||| ||||| |||||||||||||  ||   |||||||||||| |||||||| |||||| | |||||||| || || || ||| |    
T  8945712 atcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacaaaaaaacatcac 8945613  T
Q  162 gcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatttcctttttcaat 243  Q
      | || || ||||| ||||| ||  |||||||| | ||||| ||||| ||||||||||||||||||||  | |||||||||    
T  8945612 tacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaat 8945531  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 231
Target Start/End: Original strand, 8958330 - 8958527
Alignment:
Q  34 cctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtg 133  Q
    ||||| || |||||||| || ||| | ||||| |||||||||||||| ||||| ||| |||||||||  ||   |||||||||||| |||||||| ||||    
T  8958330 ccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatcttctttgtg 8958429  T
Q  134 cattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt 231  Q
    || | | || | | || || || ||| |  ||||||| ||||| ||||  ||  |||| ||||| ||||||||||| ||||| |||||||||||||||    
T  8958430 cacttagctactcacaaaaaaacatcactgccatcacaagatcttcttcgaatgattgctctgaaccttctttggatcttaactacccttcttttatt 8958527  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 8974752 - 8974937
Alignment:
Q  46 ggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttca 145  Q
    ||||| || |||||||| ||||| | ||||||| | |||||||||||||||||||  ||   |||||||||||| |||||||| |||||| | |||||||    
T  8974752 ggagctggtcatatcaaccccaacaaagcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttca 8974851  T
Q  146 ctcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt 231  Q
    | || || || ||| |   ||| || ||||| |||  |||  |||||||| | ||||| ||||| || ||||||||||||||||||    
T  8974852 cacaaaaaaacatcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttatt 8974937  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 8963342 - 8963456
Alignment:
Q  32 cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg 131  Q
    ||||||| || |||||||| || |||||||| || |||| ||||||||| ||||| ||||||||||||   ||   |||||||||||| ||| |||| ||    
T  8963342 caccttttgcattgggagctggtcatatcaaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttg 8963441  T
Q  132 tgcattaaacttcac 146  Q
    |||| | ||||||||    
T  8963442 tgcacttaacttcac 8963456  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 243
Target Start/End: Complemental strand, 34962525 - 34962314
Alignment:
Q  32 cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg 131  Q
    ||||||| || |||||||| || ||| | ||||| |||||||||||||| ||||| |||||||||||||  ||   ||||||||||||||||||||| ||    
T  34962525 caccttttgcattgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttg 34962426  T
Q  132 tgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt 231  Q
    |||| | || | | | || || || ||| |  ||||||| ||||| ||||  ||  |||||||| | ||||| ||||| ||||| |||||||||||||||    
T  34962425 tgcacttaaatactcacaaaaaaacatcactaccatcacaagatcctcttccaatgattgttctaaaccttccttggatcttaactacccttcttttatt 34962326  T
Q  232 tcctttttcaat 243  Q
     | |||||||||    
T  34962325 gcttttttcaat 34962314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 21686934 - 21686706
Alignment:
Q  3 agacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgca 102  Q
    ||||||||| |||||| ||||| ||||  | ||||| || |||||||| || ||||| || || |||||||||||||||||||| ||||||||||||       
T  21686934 agacattggaaatggtaacagagcagcaactccttttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatc 21686835  T
Q  103 ggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgaccctt 202  Q
    ||   |||||||||| | |||||||| |||||| | |||||||| || || || |||    |||| || ||||| ||||| ||  |||| ||| | ||||    
T  21686834 ggtgtacaagattatattaatcttctttgtgcacttaacttcacacaaaaaaacatcagtgccattacaagatcttctttcaatgattgctctaaacctt 21686735  T
Q  203 ctttggaccttaattacccttcttttatt 231  Q
    | || || ||||| |||||||||||||||    
T  21686734 ccttagatcttaactacccttcttttatt 21686706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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