View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5379_low_10 (Length: 225)
Name: NF5379_low_10
Description: NF5379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5379_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 54790198 - 54790386
Alignment:
| Q |
1 |
tatttctaaactgtgcacaatgcatgttatgcacttatgcagtttgtttcgctttggggaatatcttattcttttttctaattgcatcatatatatctct |
100 |
Q |
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| T |
54790198 |
tatttgtaaactgtgcacaatgcatgttatgcacttatgcagtttgttttgctttggggaatatcttattcttttttctaattgcatcatatatatctct |
54790297 |
T |
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| Q |
101 |
catgtccatctatctcactgtaatgttgttttcttttatgaaaaac--atattttatgctcttacccagagatgcttctatatacccgt |
187 |
Q |
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| T |
54790298 |
catgtccatctatctcactgtaatgttgttttcttttatgaaaaacatatattttatgctcttatccagagatgcttctatatacccgt |
54790386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 54778947 - 54778759
Alignment:
| Q |
1 |
tatttctaaactgtgcacaatgcatgttatgcacttatgcagtttgtttcgctttggggaatatcttattcttttttctaattgcatcatatatatctct |
100 |
Q |
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| T |
54778947 |
tatttgtaaactgtgcacaatgcatgttatgcacttatgcagtttgttttgctttggggaatatcttattcttttttctaattgcatcatatatatctct |
54778848 |
T |
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| Q |
101 |
catgtccatctatctcactgtaatgttgttttcttttatgaaaaac--atattttatgctcttacccagagatgcttctatatacccgt |
187 |
Q |
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| T |
54778847 |
catgtccatttatctcactgtaatgttgttttcttttatgaaaaacatatattttatgctcttatccagagatgcttctatatacccgt |
54778759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 52282866 - 52283045
Alignment:
| Q |
12 |
tgtgcacaatgcatgttatgcacttatgcagttt-----gtttcgctttggggaatatcttattcttttttctaattgcatcatatatatctctcatgtc |
106 |
Q |
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| T |
52282866 |
tgtgcacaatgcatgttatgcacttatgcagtttagtttgttttgctctgggggatatcttattctttttcctaattgcatcatgtatatctctcatgtc |
52282965 |
T |
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| Q |
107 |
catctatctcactgtaatgttgttttcttttatgaaaaac--atattttatgctcttacccagagatgcttctatatacc |
184 |
Q |
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|||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||| |||||| |
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| T |
52282966 |
tatctatctcactataatgttgttttcttttatgtaaaacatatattttatgcccttatcgagagatgcttctttatacc |
52283045 |
T |
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