View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5379_low_5 (Length: 474)

Name: NF5379_low_5
Description: NF5379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5379_low_5
NF5379_low_5
[»] chr4 (20 HSPs)
chr4 (9-474)||(54779177-54779628)
chr4 (274-474)||(52282415-52282624)
chr4 (280-396)||(54789791-54789909)
chr4 (143-181)||(35780565-35780603)
chr4 (223-257)||(54789722-54789756)
chr4 (136-181)||(1105450-1105495)
chr4 (136-181)||(10431444-10431489)
chr4 (136-181)||(37514577-37514622)
chr4 (136-181)||(38209843-38209888)
chr4 (136-181)||(55255099-55255144)
chr4 (141-181)||(9579476-9579516)
chr4 (141-181)||(9585171-9585211)
chr4 (143-181)||(5128992-5129030)
chr4 (416-474)||(54789912-54789970)
chr4 (136-181)||(17679236-17679281)
chr4 (136-181)||(27596641-27596686)
chr4 (148-181)||(35463960-35463993)
chr4 (136-181)||(45560706-45560751)
chr4 (136-181)||(47128000-47128045)
chr4 (136-181)||(48208469-48208514)
[»] chr8 (9 HSPs)
chr8 (280-396)||(19295832-19295950)
chr8 (136-181)||(45472210-45472255)
chr8 (223-257)||(19295763-19295797)
chr8 (136-181)||(2952474-2952519)
chr8 (136-181)||(3048775-3048820)
chr8 (136-181)||(5860997-5861042)
chr8 (136-181)||(20003878-20003923)
chr8 (136-181)||(30883129-30883174)
chr8 (416-474)||(19295953-19296011)
[»] chr1 (12 HSPs)
chr1 (142-181)||(5027982-5028021)
chr1 (136-181)||(3406342-3406387)
chr1 (136-181)||(3440433-3440478)
chr1 (136-181)||(14146224-14146269)
chr1 (136-181)||(23181730-23181775)
chr1 (136-181)||(27906950-27906995)
chr1 (136-181)||(44655558-44655603)
chr1 (141-181)||(41697286-41697326)
chr1 (136-181)||(6771715-6771760)
chr1 (136-181)||(6888488-6888533)
chr1 (136-181)||(10912096-10912141)
chr1 (141-181)||(16139979-16140019)
[»] scaffold0070 (1 HSPs)
scaffold0070 (136-181)||(1030-1075)
[»] chr6 (11 HSPs)
chr6 (136-181)||(19741225-19741270)
chr6 (136-181)||(23070891-23070936)
chr6 (136-181)||(24711144-24711189)
chr6 (141-181)||(21280352-21280392)
chr6 (143-181)||(27314773-27314811)
chr6 (136-181)||(12083642-12083687)
chr6 (136-181)||(13727651-13727696)
chr6 (136-181)||(21479303-21479348)
chr6 (136-181)||(30832669-30832714)
chr6 (151-183)||(609852-609884)
chr6 (422-474)||(22745526-22745578)
[»] chr5 (9 HSPs)
chr5 (136-181)||(31881592-31881637)
chr5 (136-181)||(15480231-15480276)
chr5 (136-181)||(19523112-19523157)
chr5 (136-181)||(30853285-30853330)
chr5 (136-181)||(34756616-34756661)
chr5 (151-181)||(33046398-33046428)
chr5 (136-181)||(2274817-2274862)
chr5 (136-181)||(36188021-36188066)
chr5 (141-181)||(22987474-22987514)
[»] chr3 (14 HSPs)
chr3 (136-181)||(3954854-3954899)
chr3 (136-181)||(13795206-13795251)
chr3 (136-181)||(27078820-27078865)
chr3 (136-181)||(27084617-27084662)
chr3 (136-181)||(36605865-36605910)
chr3 (136-181)||(36716277-36716322)
chr3 (136-181)||(38681349-38681394)
chr3 (136-181)||(53149459-53149504)
chr3 (136-181)||(54619455-54619500)
chr3 (141-181)||(1148361-1148401)
chr3 (136-181)||(42098717-42098762)
chr3 (136-181)||(47467600-47467645)
chr3 (136-181)||(50258736-50258781)
chr3 (136-180)||(8074089-8074133)
[»] chr7 (4 HSPs)
chr7 (136-181)||(12596431-12596476)
chr7 (136-181)||(18777020-18777065)
chr7 (136-181)||(28749600-28749645)
chr7 (64-101)||(28749682-28749719)
[»] chr2 (9 HSPs)
chr2 (136-181)||(3155022-3155067)
chr2 (136-181)||(3952918-3952963)
chr2 (136-181)||(6964811-6964856)
chr2 (136-181)||(7162696-7162741)
chr2 (136-181)||(4505698-4505743)
chr2 (136-181)||(12337691-12337736)
chr2 (136-181)||(34693166-34693211)
chr2 (136-181)||(34715578-34715623)
chr2 (141-181)||(40635981-40636021)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 474
Target Start/End: Complemental strand, 54779628 - 54779177
Alignment:
Q  9 gaagaatatcagtgatgagtattgagtagtgattagcgagtgagcgacgaattggtgagggcatgaaataattattattttttattggaggatggtatac 108  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  54779628 gaagaaaatcggtgatgagtattgagtagtgatgagcgagtgagcgacgaattggtgagggcatgaaataattttttttttttattggaggatggtatac 54779529  T
Q  109 tactggacatannnnnnnnnnnnnnnngaggtccatccttgggggaggcccagctcggttgagctgtttgcactttgcaccccctcagggccgggcctgg 208  Q
    |||||| ||||                 ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  54779528 tactgggcatattttttttttttt----aggtccatccttgggggaggcccagctcggttgagctgtttgcact-------ccctcagggccgggcctgg 54779440  T
Q  209 ttatacacaagtggtttttagttgaatacctatgtgtgaaagtttaaatgctgnnnnnnnattccttcccgttcttagctctgcatttttgtgataggaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||    
T  54779439 ttatacacaagtggtttttagttgaatacctatgtgtgaaagtttaaatgctgtttttttattccttcccattcttagctctgcatttttgtgataggaa 54779340  T
Q  309 ctagagtattataaggtcttttatttgtatattattattttgcctagtttcaaccggtctttctttctttgtggcacacacctctgatcaaaggcgtgtc 408  Q
    |||||||||||||||||||||||||||||||||||  ||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54779339 ctagagtattataaggtcttttatttgtatattatgttt---cctagtttcaaccagtctttctttctttgtggcacacacctctgatcaaaggcgtgtc 54779243  T
Q  409 ccacacttgtctgtcggtgtcggacactaacatgacactgacacatgtgattacgttcaagtaatt 474  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54779242 ccacacttgtcggtcggtgtcggacactaacatgacactgacacatgtgattacgttcaaataatt 54779177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 274 - 474
Target Start/End: Original strand, 52282415 - 52282624
Alignment:
Q  274 ttcccgttcttagctctgcatttttgtgataggaactagagtattataaggtcttttatttgtatattattattttgcctagtttcaaccggtctttctt 373  Q
    ||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  52282415 ttcccattcctagctctgcatttttgtgatagcaactagggtattataaggtcttttatttgtatattattatttttcctagtttcaaccagtctttctt 52282514  T
Q  374 tctttgtggcac--acacctctgatcaaaggc-------gtgtcccacacttgtctgtcggtgtcggacactaacatgacactgacacatgtgattacgt 464  Q
     || ||||||||  ||||||||||||||||||       |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||    
T  52282515 actctgtggcaccaacacctctgatcaaaggcgtgttcagtgtcccacacttgtcggtcggtgtcggacactaacacgaaactgacacatgtgattatgt 52282614  T
Q  465 tcaagtaatt 474  Q
     ||| |||||    
T  52282615 acaaataatt 52282624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 54789791 - 54789909
Alignment:
Q  280 ttcttagctctgcatttttgtgataggaactagagtattataaggtcttttatttgtatattattattttgcctagtttcaaccggtctttctttctttg 379  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54789791 ttcttagctctgcatttttgtgataggaactagggtattataaggtcttttatttgtatattattattttgcctagtttcaaccagtctttctttctttg 54789890  T
Q  380 tggcac--acacctctgat 396  Q
    ||||||  |||||||||||    
T  54789891 tggcaccaacacctctgat 54789909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 35780565 - 35780603
Alignment:
Q  143 atccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  35780565 atccgtgggggaggcccagctcggttgagctgtttgcac 35780603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 54789722 - 54789756
Alignment:
Q  223 tttttagttgaatacctatgtgtgaaagtttaaat 257  Q
    |||||||||||||||||||||||||||||||||||    
T  54789722 tttttagttgaatacctatgtgtgaaagtttaaat 54789756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 1105495 - 1105450
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  1105495 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 1105450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 10431444 - 10431489
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  10431444 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 10431489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 37514622 - 37514577
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||    
T  37514622 gaggcccatccttggaggaggcccagctcgtttgagctgtttgcac 37514577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 38209843 - 38209888
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  38209843 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 38209888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 55255144 - 55255099
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  55255144 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 55255099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 9579476 - 9579516
Alignment:
Q  141 ccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  9579476 ccatccttgagggaggcccagctcgtttgagctgtttgcac 9579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 9585171 - 9585211
Alignment:
Q  141 ccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  9585171 ccatccttgagggaggcccagctcgtttgagctgtttgcac 9585211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 5128992 - 5129030
Alignment:
Q  143 atccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  5128992 atccttgagggaggcccagctcgtttgagctgtttgcac 5129030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 474
Target Start/End: Original strand, 54789912 - 54789970
Alignment:
Q  416 tgtctgtcggtgtcggacactaacatgacactgacacatgtgattacgttcaagtaatt 474  Q
    |||| |||||||||  ||||||||| |||| ||||||||||| |||||||||| |||||    
T  54789912 tgtcggtcggtgtccaacactaacacgacattgacacatgtggttacgttcaaataatt 54789970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 17679281 - 17679236
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||||||    
T  17679281 gaggcccatccttgagggaggctcagctcgtttgagctgtttgcac 17679236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 27596641 - 27596686
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||| ||||||||||||||||| |||||||||| ||||    
T  27596641 gaggcccatcctcgggggaggcccagctcgtttgagctgttcgcac 27596686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 35463993 - 35463960
Alignment:
Q  148 tgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||||||||||| ||||||||||||||||    
T  35463993 tgggggaggcccagctctgttgagctgtttgcac 35463960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 45560706 - 45560751
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  45560706 gaggcccatctttgagggaggcccagctcgtttgagctgtttgcac 45560751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 47128045 - 47128000
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| ||| |||||||||||    
T  47128045 gaggcccatccttgagggaggcccagctcgtttgggctgtttgcac 47128000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 48208514 - 48208469
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||    
T  48208514 gaggcccatccttgagggaggcccaactcgtttgagctgtttgcac 48208469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 19295832 - 19295950
Alignment:
Q  280 ttcttagctctgcatttttgtgataggaactagagtattataaggtcttttatttgtatattattattttgcctagtttcaaccggtctttctttctttg 379  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19295832 ttcttagctctgcatttttgtgataggaactagggtattataaggtcttttatttgtatattattattttgcctagtttcaaccagtctttctttctttg 19295931  T
Q  380 tggcac--acacctctgat 396  Q
    ||||||  |||||||||||    
T  19295932 tggcaccaacacctctgat 19295950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 45472255 - 45472210
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||    
T  45472255 gaggcccatccttgggggtggcccagctcggttgagctgtttgcac 45472210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 19295763 - 19295797
Alignment:
Q  223 tttttagttgaatacctatgtgtgaaagtttaaat 257  Q
    |||||||||||||||||||||||||||||||||||    
T  19295763 tttttagttgaatacctatgtgtgaaagtttaaat 19295797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 2952474 - 2952519
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  2952474 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 2952519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 3048775 - 3048820
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  3048775 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 3048820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 5860997 - 5861042
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  5860997 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 5861042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 20003878 - 20003923
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  20003878 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 20003923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 30883174 - 30883129
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  30883174 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 30883129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 474
Target Start/End: Original strand, 19295953 - 19296011
Alignment:
Q  416 tgtctgtcggtgtcggacactaacatgacactgacacatgtgattacgttcaagtaatt 474  Q
    |||| |||||||||  ||||||||| |||| ||||||||||| |||||||||| |||||    
T  19295953 tgtcggtcggtgtccaacactaacacgacattgacacatgtggttacgttcaaataatt 19296011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 5027982 - 5028021
Alignment:
Q  142 catccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5027982 catccttgggggaggcccagctcggttgagctgtttgcac 5028021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 3406387 - 3406342
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||    
T  3406387 gaggcccatccttgggggaggcccagctcgtttgagctgtttgcac 3406342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 3440433 - 3440478
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||    
T  3440433 gaggcccatccttgggggaggcccagctcgtttgagctgtttgcac 3440478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 14146269 - 14146224
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  14146269 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 14146224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 23181775 - 23181730
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||    
T  23181775 gaggcccatcattgggggtggcccagctcggttgagctgtttgcac 23181730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 27906950 - 27906995
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  27906950 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 27906995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 44655603 - 44655558
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  44655603 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 44655558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 41697286 - 41697326
Alignment:
Q  141 ccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  41697286 ccatccttgagggaggcccagctcgtttgagctgtttgcac 41697326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 6771760 - 6771715
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||  ||||||||||||||| |||||||||||||||    
T  6771760 gaggcccatccttaagggaggcccagctcgtttgagctgtttgcac 6771715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 6888533 - 6888488
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||    
T  6888533 gaggcccatccttgagggaggcccaactcgtttgagctgtttgcac 6888488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 10912096 - 10912141
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| |||||||||| |||||||||||||| |||||||||| ||||    
T  10912096 gaggcccatccttggaggaggcccagctcgtttgagctgttcgcac 10912141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 16140019 - 16139979
Alignment:
Q  141 ccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||| |||||||||| |||| |||||||||||||||    
T  16140019 ccatccttgagggaggcccaactcgtttgagctgtttgcac 16139979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 1075 - 1030
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  1075 gaggtccatccttgagggaggcccagctcgtttgagctgtttgcac 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 19741225 - 19741270
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  19741225 gaggtccatccttgagggaggcccagctcgtttgagctgtttgcac 19741270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 23070891 - 23070936
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  23070891 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 23070936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 24711144 - 24711189
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||    
T  24711144 gaggcccatccttgggggaggcccagcttgtttgagctgtttgcac 24711189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 21280392 - 21280352
Alignment:
Q  141 ccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  21280392 ccatccttgagggaggcccagctcgtttgagctgtttgcac 21280352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 27314773 - 27314811
Alignment:
Q  143 atccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  27314773 atccttgagggaggcccagctcgtttgagctgtttgcac 27314811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 12083642 - 12083687
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| || |||||||||||| |||||||||||||||    
T  12083642 gaggcccatccttgaggaaggcccagctcgtttgagctgtttgcac 12083687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 13727651 - 13727696
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  13727651 gaggcccatctttgagggaggcccagctcgtttgagctgtttgcac 13727696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 21479348 - 21479303
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| || ||||||||||||    
T  21479348 gaggcccatccttgagggaggcccagctcgttttagctgtttgcac 21479303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 30832669 - 30832714
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||  |||||||||||||||    
T  30832669 gaggcccatccttgagggaggcccagctcatttgagctgtttgcac 30832714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 609852 - 609884
Alignment:
Q  151 gggaggcccagctcggttgagctgtttgcactt 183  Q
    ||||||||||||||||||||||| |||||||||    
T  609852 gggaggcccagctcggttgagctctttgcactt 609884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 474
Target Start/End: Original strand, 22745526 - 22745578
Alignment:
Q  422 tcggtgtcggacactaacatgacactgacacatgtgattacgttcaagtaatt 474  Q
    |||||||| ||||| ||||||||||||| |||||| |||||||| || |||||    
T  22745526 tcggtgtccgacaccaacatgacactgaaacatgtcattacgtttaaataatt 22745578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 31881592 - 31881637
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  31881592 gaggtccatccttgagggaggcccagctcgtttgagctgtttgcac 31881637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 15480231 - 15480276
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  15480231 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 15480276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 19523157 - 19523112
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  19523157 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 19523112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 30853330 - 30853285
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||    
T  30853330 gaggtccatccttgaaggaggcccagctcgtttgagctgtttgcac 30853285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 34756616 - 34756661
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  34756616 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 34756661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 181
Target Start/End: Original strand, 33046398 - 33046428
Alignment:
Q  151 gggaggcccagctcggttgagctgtttgcac 181  Q
    |||||||||||||||||||||||||||||||    
T  33046398 gggaggcccagctcggttgagctgtttgcac 33046428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 2274862 - 2274817
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||||||||||||| |||||||||| |||  |||||||||||||||    
T  2274862 gaggtccatccttgagggaggcccaactcatttgagctgtttgcac 2274817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 36188021 - 36188066
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||    
T  36188021 gaggcccatccttgagggaggcccaactcgtttgagctgtttgcac 36188066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 22987474 - 22987514
Alignment:
Q  141 ccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||| ||| ||||||||||||||| |||||||||||||||    
T  22987474 ccatctttgagggaggcccagctcgtttgagctgtttgcac 22987514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 3954854 - 3954899
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  3954854 gaggtccatccttgagggaggcccagctcgtttgagctgtttgcac 3954899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 13795251 - 13795206
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  13795251 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 13795206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 27078820 - 27078865
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  27078820 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 27078865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 27084617 - 27084662
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  27084617 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 27084662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 36605910 - 36605865
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  36605910 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 36605865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 36716277 - 36716322
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  36716277 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 36716322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 38681349 - 38681394
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  38681349 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 38681394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 53149459 - 53149504
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||    
T  53149459 gaggcccatccttggtggaggcccagctcgtttgagctgtttgcac 53149504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 54619455 - 54619500
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  54619455 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 54619500  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 1148361 - 1148401
Alignment:
Q  141 ccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  1148361 ccatccttgggggaggcccagctcgtttgagctgttcgcac 1148401  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 42098762 - 42098717
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||    
T  42098762 gaggcccatccttgtgggaggcccaactcgtttgagctgtttgcac 42098717  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 47467645 - 47467600
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||||||    
T  47467645 gaggcccatccttgagggaggctcagctcgtttgagctgtttgcac 47467600  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 50258736 - 50258781
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||  |||||||||||||||    
T  50258736 gaggcccatccttgagggaggcccagctcatttgagctgtttgcac 50258781  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 8074089 - 8074133
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgca 180  Q
    |||| |||||||||| |||||||||||||| ||||| ||||||||    
T  8074089 gaggcccatccttggaggaggcccagctcgattgagttgtttgca 8074133  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 12596431 - 12596476
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  12596431 gagggccatccttgagggaggcccagctcgtttgagctgtttgcac 12596476  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 18777020 - 18777065
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  18777020 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 18777065  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 28749645 - 28749600
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  28749645 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 28749600  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 28749719 - 28749682
Alignment:
Q  64 tgagggcatgaaataattattattttttattggaggat 101  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  28749719 tgagggaatgaaataattatttttttttattggaggat 28749682  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 3155067 - 3155022
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  3155067 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 3155022  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 3952963 - 3952918
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  3952963 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 3952918  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 6964856 - 6964811
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  6964856 gaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 6964811  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 7162741 - 7162696
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  7162741 gaggcccatccttgtgggaggcccagctcgtttgagctgtttgcac 7162696  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 4505743 - 4505698
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  4505743 gaggcccatcattgagggaggcccagctcgtttgagctgtttgcac 4505698  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 12337691 - 12337736
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||||||    
T  12337691 gaggcccatccttgagggaggctcagctcgtttgagctgtttgcac 12337736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 34693211 - 34693166
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||    
T  34693211 gaggcccatccttgagggaggcccaactcgtttgagctgtttgcac 34693166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 34715623 - 34715578
Alignment:
Q  136 gaggtccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||    
T  34715623 gaggcccatccttgagggaggcccaactcgtttgagctgtttgcac 34715578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 40636021 - 40635981
Alignment:
Q  141 ccatccttgggggaggcccagctcggttgagctgtttgcac 181  Q
    ||||||||| |||||||||| |||| |||||||||||||||    
T  40636021 ccatccttgagggaggcccaactcgtttgagctgtttgcac 40635981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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