View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5379_low_7 (Length: 287)
Name: NF5379_low_7
Description: NF5379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5379_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 22924900 - 22925132
Alignment:
| Q |
17 |
cactattgacttggatgcttcttattatgtttccttctctaatttgtactgtcattttctatgctattgagacttttttagcaaaacggtatcgacaaac |
116 |
Q |
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| T |
22924900 |
cactattgacttggatgcttcttattatgtttccttctctaatttgtactgtcattttctatgctattgagacttttttagcaaaacggtatcgac-aac |
22924998 |
T |
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| Q |
117 |
actctagtgagctgacttgaggtcggcacaatgttagaaacgacacccttagaacaataagtcaattaaattgaaataatttgaaataattttaagacgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
22924999 |
actctagtgagctgacttgaggtcggcacaatgttagaaacgacacccttagaacaataagtcaattaaa----------ttgaaataattttaagatgt |
22925088 |
T |
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| Q |
217 |
gttatttgaacaactgtttatataatggtctctgtaagcttagt |
260 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
22925089 |
gttatttgaacaaccgtttatataacggtctctgtaagcttagt |
22925132 |
T |
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