View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5380-Insertion-11 (Length: 392)
Name: NF5380-Insertion-11
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5380-Insertion-11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0393 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 6 - 392
Target Start/End: Original strand, 2411160 - 2411546
Alignment:
| Q |
6 |
catcatgtattttagaagatatgaatttggcctttataatattactgtgaagaaagatgaacaaagaaaaagaataaagacgaatgcgaagatggatgaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2411160 |
catcatgtattttagaagatatgaatttggcctttataatattactgtgaagaaagatgaacaaagaaaaagaataaagacgaatgcaaagatggatgaa |
2411259 |
T |
|
| Q |
106 |
gctatttcattttaataagtgattacataagttttttgggtgctatgatacaccatgtagtgtaaaacatagtaaagatgttggattacatttaagatta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2411260 |
gctatttcattttaataagtgattacataagttttttgggtgctatgatacaccatgtagtgtaaaacatagtaaagatgttggattacatttaagatta |
2411359 |
T |
|
| Q |
206 |
ctaaaagctatatattttttgtatcaaagactgaaaaagaacactgctcccttcatagtccaccaccatctgtttttgatttggtagacatccctttgtt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2411360 |
ctaaaagctatatattttttgtatcaaagactgaaaaagaacactgctcccttcatagtccaccaccatctgtttttgatttggtagacatccctttgtt |
2411459 |
T |
|
| Q |
306 |
gggtagagatgagatagtatctacactttgatagcagtgttctgtttttaaccttgctatcaaagtcaaatctaacattaattgtta |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2411460 |
gggtagagatgagatagtatctacactttgatagcagatttctgtttttaaccttgctatcaaagtcaaatctaacattaattgtta |
2411546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 6 - 389
Target Start/End: Original strand, 13541 - 13923
Alignment:
| Q |
6 |
catcatgtattttagaagatatgaatttggcctttataatattactgtgaagaaagatgaacaaagaaaaagaataaagacgaatgcgaagatggatgaa |
105 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||| |||||||||| |||||||||||||||| |||| | ||| | ||||| |||||||||||| |
|
|
| T |
13541 |
catcatgtagtttagaggatctgaatttggcctttatgatattactgtcaagaaagatgaacaaaagaaaaaagaaaaaaaaaatgcaaagatggatgaa |
13640 |
T |
|
| Q |
106 |
gctatttcattttaataagtgattacata-agttttttgggtgctatgatacaccatgtagtgtaaaacatagtaaagatgttggattacatttaagatt |
204 |
Q |
| |
|
| | |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13641 |
gttgtttcattttaataagtgattacatttagttttttgggtg-tatgatacaccatgtagtgtaaaacatcgtaaagatgttggattacatttaagatt |
13739 |
T |
|
| Q |
205 |
actaaaagctatatattttttgtatcaaagactgaaaaagaacactgctcccttcatagtccaccaccatctg-tttttga-tttggtagacatcccttt |
302 |
Q |
| |
|
||||||||||||||| ||| || | || ||||| |||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
13740 |
actaaaagctatata--tttaagattactga---aaaaaaaacacttctcccttcatagtctaccaccatctgttttttgattttggtagacatcccttt |
13834 |
T |
|
| Q |
303 |
gttgggtagagatgagatagtatctacactttgatagcagtgttctg-tttttaaccttgctatcaaagtc-aaatctaacattaattg |
389 |
Q |
| |
|
||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13835 |
gttgggtagagatgagacaatatctacacttcgatagcagtgttctgttttttaaccttgctatcaaagtcaaaatctaacattaattg |
13923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 30598888 - 30599081
Alignment:
| Q |
9 |
catgtattttagaagatatgaatttggcctttataatattactgtgaagaaagatgaacaaagaaaaagaataaagacgaatgcgaagatggatgaagct |
108 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||| ||| | | ||||||| ||||| |
|
|
| T |
30598888 |
catgtattctagaggatctgaatttggcctttatgatattactgtgaagaaagatgaacaaataaaaggaaaaaagaaaaatacaatgatggataaagct |
30598987 |
T |
|
| Q |
109 |
atttcattttaataagtgattacataagttttttgggtgctatgata---caccatgtagtgt-aaaacatagtaaagatgttggattacattt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||| ||||||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
30598988 |
gtttcattttaataagtgattacataagttttttgggcgcaatgatacaccaccatgcaaagtaaaaacatagtaaagatgttggattacattt |
30599081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 30599084 - 30599120
Alignment:
| Q |
226 |
gtatcaaagactgaaaaagaacactgctcccttcata |
262 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30599084 |
gtatcaaagactgaaaatgaacactgctcccttcata |
30599120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University