View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5380-Insertion-2 (Length: 1008)

Name: NF5380-Insertion-2
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5380-Insertion-2
NF5380-Insertion-2
[»] chr1 (31 HSPs)
chr1 (6-1007)||(35294661-35295658)
chr1 (405-493)||(35213583-35213671)
chr1 (343-478)||(45526140-45526275)
chr1 (335-475)||(35272851-35272991)
chr1 (339-472)||(35203115-35203248)
chr1 (405-493)||(35206425-35206513)
chr1 (405-493)||(35216972-35217060)
chr1 (343-472)||(45534344-45534473)
chr1 (339-471)||(35192775-35192907)
chr1 (343-472)||(35476933-35477062)
chr1 (347-493)||(35145170-35145316)
chr1 (388-474)||(35228428-35228514)
chr1 (26-124)||(35245283-35245380)
chr1 (405-470)||(8640315-8640380)
chr1 (565-670)||(35273051-35273156)
chr1 (340-467)||(35265294-35265421)
chr1 (405-475)||(35222789-35222859)
chr1 (6-96)||(35225306-35225396)
chr1 (736-814)||(35265684-35265762)
chr1 (696-830)||(45527097-45527231)
chr1 (564-831)||(35193039-35193306)
chr1 (565-636)||(35228617-35228688)
chr1 (747-829)||(35249955-35250037)
chr1 (566-659)||(35207111-35207204)
chr1 (427-476)||(35253958-35254007)
chr1 (565-664)||(35265522-35265621)
chr1 (399-437)||(19267395-19267433)
chr1 (339-425)||(35148863-35148949)
chr1 (661-831)||(35203487-35203657)
chr1 (33-71)||(35219490-35219528)
chr1 (744-841)||(35477300-35477397)
[»] chr2 (3 HSPs)
chr2 (403-475)||(33137636-33137708)
chr2 (565-633)||(33136774-33136842)
chr2 (594-653)||(18558273-18558332)
[»] chr7 (4 HSPs)
chr7 (723-842)||(38633791-38633910)
chr7 (6-64)||(38632250-38632308)
chr7 (6-90)||(38634986-38635070)
chr7 (404-449)||(38635326-38635371)
[»] chr3 (4 HSPs)
chr3 (394-475)||(17663857-17663938)
chr3 (394-475)||(19246358-19246439)
chr3 (388-498)||(898894-899004)
chr3 (403-475)||(53921108-53921180)


Alignment Details
Target: chr1 (Bit Score: 830; Significance: 0; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 6 - 1007
Target Start/End: Complemental strand, 35295658 - 35294661
Alignment:
Q  6 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagataagaatataggaaatg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  35295658 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagataagaatatatgaagtg 35295559  T
Q  106 agaaaagagcacatgtagacaagccagccatcagccggatgacaatgaataaaaaccaattttcgacattcctcgtcctctcatgataattgtggataga 205  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295558 agaaaagagcacatgtagataagccagccatcagccggatgacaatgaataaaaaccaattttcgacattcctcgtcctctcatgataattgtggataga 35295459  T
Q  206 cttggaatcattatagacaacttattgttgtcacaatacaagggttcgagttgcagataaaggatttttgtgctccaagctgaattttgtgaagacaaag 305  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35295458 ctcggaatcattatagacaacttattgttgtcacaatacaaggtttcgagttgcagataaaggatttttgtgctccaagctgaattttgtgaacacaaag 35295359  T
Q  306 gtaataggtaataatataatataaacttaaaagagctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295358 gtaataggtaataatataatataaacttaaaagagctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtg 35295259  T
Q  406 agagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagctt---attagcattttga 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  35295258 agagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagcttattattagcattttga 35295159  T
Q  503 agtttgaactattcatttgaaacaacgtacaccaactttttgtacaataatcagttcagatgatacctttttaccatggtcaatgatcacagggcgatca 602  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||||    
T  35295158 agtttgaaatattcatttgaaacaacgtacaccaactttttgtacaataattaattcagatgatacctttttaccatggtcaatgattatagggcgatca 35295059  T
Q  603 gatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgtaagattatagagtcaatgaaaggagaatgaggaggtagaaagc 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295058 gatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgtaagattatagagtcaatgaaaggagaatgaggaggtagaaagc 35294959  T
Q  703 gatcccagacatcgtcggagttggcagcagaatggaaagttttggaaatgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggc 802  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35294958 gatcccagacatcgtcggagttggcagcagaatggaaagttttggaaacgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggc 35294859  T
Q  803 aatgcacccttctgccaattcctcaaactttaccattcttagttaccagtacgagagctttttagctatgaagaatcttt-ataccagtccttcnnnnnn 901  Q
    |||||||||||||||||||||||||||| |||||||| |||             |||||||||||||||||||||||||| |||||||||||||          
T  35294858 aatgcacccttctgccaattcctcaaacattaccattttta------------cgagctttttagctatgaagaatctttaataccagtccttctttttt 35294771  T
Q  902 naat-aataaagttagtatgatgagtatttggaatattaggtagatgaccatcttctacatag-ataatcattgacattagtggtgagcc-atgac-aat 997  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||    
T  35294770 taataaataaagttagtatgatgagtatttggaatattaggtagatgaccatcttctacatagaataatcattgacattagtggagagccaatgacaaat 35294671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 405 - 493
Target Start/End: Original strand, 35213583 - 35213671
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagcttatta 493  Q
    ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35213583 gagagatctagcagcaagcatataacatttttttccactttttctctccaattgaaagctctgcatttcaatatttccaaagtttatta 35213671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 343 - 478
Target Start/End: Original strand, 45526140 - 45526275
Alignment:
Q  343 aacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccac 442  Q
    |||||||||||| |||||| | ||||| |||||| ||| |||   ||||||||| ||||   ||||||||||||||||||||| ||||||||||| ||||    
T  45526140 aacctggaatcaggcatagcagtccagatccaatagcggtcatcatcaccccaaataatgtggagagatctagcagcaagcatgtaacacttttttccac 45526239  T
Q  443 tctttctctccaattgaaagctctgcatttcaatat 478  Q
    ||||||| ||||||||||||||||||||||||||||    
T  45526240 tctttctatccaattgaaagctctgcatttcaatat 45526275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 335 - 475
Target Start/End: Original strand, 35272851 - 35272991
Alignment:
Q  335 aaagagctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactt 434  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||   |   |||||||||  ||| |  ||||||||||||| |||||| ||||||||    
T  35272851 aaagagctaacctggaatcaggcatagaaatccagttccaatagcgtctatcatcaccccaaacaattgcaagagatctagcagaaagcatgtaacactt 35272950  T
Q  435 tttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    ||| |||||||||||||| ||||||| ||||||||||||||    
T  35272951 ttttccactctttctctctaattgaatgctctgcatttcaa 35272991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 339 - 472
Target Start/End: Original strand, 35203115 - 35203248
Alignment:
Q  339 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttc 438  Q
    |||||||||||||||| |||||| ||||||||||||||  || |||   | |||||||  ||| | ||||||||||||||||||||| |||||||||||     
T  35203115 agctaacctggaatcaggcatagcaatccagttccaatatcgatcatcattaccccaagcaatggagagagatctagcagcaagcatgtaacactttttt 35203214  T
Q  439 ccactctttctctccaattgaaagctctgcattt 472  Q
    ||||||||||| |||||||||| |||||||||||    
T  35203215 ccactctttctatccaattgaatgctctgcattt 35203248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 405 - 493
Target Start/End: Original strand, 35206425 - 35206513
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagcttatta 493  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||    
T  35206425 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaatatttccaaagcttatta 35206513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 405 - 493
Target Start/End: Original strand, 35216972 - 35217060
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagcttatta 493  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||    
T  35216972 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaatatttccaaagcttatta 35217060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 343 - 472
Target Start/End: Original strand, 45534344 - 45534473
Alignment:
Q  343 aacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccac 442  Q
    |||||||||||| |||||| |||||||||||| | ||| |     ||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||    
T  45534344 aacctggaatcaggcatagcaatccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccac 45534443  T
Q  443 tctttctctccaattgaaagctctgcattt 472  Q
    | ||||| || |||||||||||||||||||    
T  45534444 tatttctatctaattgaaagctctgcattt 45534473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 339 - 471
Target Start/End: Original strand, 35192775 - 35192907
Alignment:
Q  339 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttc 438  Q
    ||||||||| |||| | ||||||||||||||||||||| |||   |   |||||||||  ||| | |||||||||||||||||||||||||||||||||     
T  35192775 agctaacctagaattaggcatagaaatccagttccaatagcgtcgatcatcaccccaagcaatggagagagatctagcagcaagcatataacactttttt 35192874  T
Q  439 ccactctttctctccaattgaaagctctgcatt 471  Q
    |||||||| || |||||||||||||||| ||||    
T  35192875 ccactcttcctatccaattgaaagctctacatt 35192907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 343 - 472
Target Start/End: Original strand, 35476933 - 35477062
Alignment:
Q  343 aacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccac 442  Q
    |||||||||||| | | || ||||||||| ||||  || |||   |||||||||  ||| | ||||||||||||||||||||| ||||||||||||||||    
T  35476933 aacctggaatcaggtacagcaatccagttgcaatatcgatcatcatcaccccaagcaatggcgagagatctagcagcaagcatgtaacactttttcccac 35477032  T
Q  443 tctttctctccaattgaaagctctgcattt 472  Q
    ||||||| |||||||||| |||||||||||    
T  35477033 tctttctatccaattgaaggctctgcattt 35477062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 347 - 493
Target Start/End: Original strand, 35145170 - 35145316
Alignment:
Q  347 tggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctt 446  Q
    |||||||||||| || ||||||||| ||||  || |||   |||| ||||  ||| | |||||||||||||| || ||| ||||||||||| | |||||     
T  35145170 tggaatcatgcacagcaatccagttgcaatatcgatcatcatcactccaagcaatggcgagagatctagcagaaaccatgtaacacttttttctactctc 35145269  T
Q  447 tctctccaattgaaagctctgcatttcaatatttccaaagcttatta 493  Q
    ||| | |||||||||||| ||||||||||||||||||||||||||||    
T  35145270 tctattcaattgaaagctttgcatttcaatatttccaaagcttatta 35145316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 388 - 474
Target Start/End: Original strand, 35228428 - 35228514
Alignment:
Q  388 tcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttca 474  Q
    ||||||||| |||| |  ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||| |||||||    
T  35228428 tcaccccaagtaatggcaagagatctagcagaaagcatataacacttctttccactctttctctccaattgaaaactctacatttca 35228514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 35245283 - 35245380
Alignment:
Q  26 acagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagataagaatataggaaatgagaaaagagcacatgtaga 124  Q
    |||||| |||||||||||||||| || ||||||| ||||| |||||   ||||||||||||| |||||||||||||| ||||||||||||| |||||||    
T  35245283 acagcatgaagctcagcaacttcagg-aacctgttcaaaagttgtgcagaaaagttgcaaaggtaagaatataggaactgagaaaagagcatatgtaga 35245380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 8640315 - 8640380
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcat 470  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||    
T  8640315 gagagatctagcagcaagcatgtaacacttttttccactctttctgtccaattgaacgctctgcat 8640380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 565 - 670
Target Start/End: Original strand, 35273051 - 35273156
Alignment:
Q  565 atacctttttaccatggtcaatgatcacagggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgtaagat 664  Q
    ||||||||||| |||| || ||||| ||||||||||||||||| || ||||| |||||||||||||||||||  |||  |||||||||||| ||| ||||    
T  35273051 atacctttttatcatgatcgatgatgacagggcgatcagatagagcaagatagagatcctttttggtaggaatgttggtaagggaaggagagtgtgagat 35273150  T
Q  665 tataga 670  Q
     |||||    
T  35273151 aataga 35273156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 340 - 467
Target Start/End: Original strand, 35265294 - 35265421
Alignment:
Q  340 gctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcc 439  Q
    ||||||||||||||| ||| || |||||||||||| | | ||| ||  |||||||||  ||| |  ||||||||||||| |||||| ||||||||||| |    
T  35265294 gctaacctggaatcaggcaaaggaatccagttccagtagtgcttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacacttttttc 35265393  T
Q  440 cactctttctctccaattgaaagctctg 467  Q
    |||||||||| |||||||| || |||||    
T  35265394 cactctttctgtccaattggaaactctg 35265421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 35222789 - 35222859
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    |||||||||||||||||||||   ||||||||| ||||||||||| |||||||||| |||||  |||||||    
T  35222789 gagagatctagcagcaagcatgacacacttttttccactctttctatccaattgaacgctcttaatttcaa 35222859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 35225306 - 35225396
Alignment:
Q  6 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagataagaata 96  Q
    ||||||||||||||||   ||||  | |||| || |||||||| || || ||||||||||||||||  |||||||||||||||||||||||    
T  35225306 cacgaatttcaagccaacacacatgaagaagttcggcaacttcaggaaatctgtccaaaatttgtgcacaaaagttgcaaagataagaata 35225396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 736 - 814
Target Start/End: Original strand, 35265684 - 35265762
Alignment:
Q  736 ggaaagttttggaaatgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggcaatgcacccttc 814  Q
    ||||||| || |||| || ||||||| | ||||||||||| |||||||||||||| | ||||||||||||||| |||||    
T  35265684 ggaaagtctttgaaacgacggagagtctgccggcgtcaactggagttgtacgagagactatggtggcaatgcaaccttc 35265762  T

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Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 696 - 830
Target Start/End: Original strand, 45527097 - 45527231
Alignment:
Q  696 agaaagcgatcccagacatcgtcggagttggcagcagaatggaaagttttggaaatgagggagagttttccggcgtcaacgggagttgtacgagacagta 795  Q
    |||||| ||| ||||||  | ||||| | ||| |||||| ||||||| || |||| || ||||||| | ||||||||||| ||||| ||||| |||||||    
T  45527097 agaaagtgattccagacggcatcggaatcggcggcagaaaggaaagtcttcgaaacgacggagagtctgccggcgtcaacaggagtcgtacgtgacagta 45527196  T
Q  796 tggtggcaatgcacccttctgccaattcctcaaac 830  Q
    ||| || |||||| |||||||| || || ||||||    
T  45527197 tggaggaaatgcaaccttctgctaaatcttcaaac 45527231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 564 - 831
Target Start/End: Original strand, 35193039 - 35193306
Alignment:
Q  564 gatacctttttaccatggtcaatgatcacagggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgtaaga 663  Q
    |||||||| | | ||| ||| ||||| | |||| ||||||| || |||||||| ||| | |||||||  || || ||  ||||||| ||||| ||| |||    
T  35193039 gataccttctgatcattgtcgatgatgatagggagatcagagagagcgagatacagagcttttttggatggtacattagcaagggatggagagtgtgaga 35193138  T
Q  664 ttatagagtcaatgaaaggagaatgaggaggtagaaagcgatcccagacatcgtcggagttggcagcagaatggaaagttttggaaatgagggagagttt 763  Q
    | |||||||| |||||| ||||||  | ||| |||||  ||| ||||||  |||| || | ||| |||||  ||||||| |||||||  | ||||||| |    
T  35193139 tgatagagtcgatgaaatgagaatcggaagggagaaattgattccagacggcgtcagaatcggctgcagataggaaagtcttggaaacaacggagagtct 35193238  T
Q  764 tccggcgtcaacgggagttgtacgagacagtatggtggcaatgcacccttctgccaattcctcaaact 831  Q
     ||||| ||| | |||||||| ||||| | ||||| || |||||| ||||| |  |||||||||||||    
T  35193239 gccggcatcagccggagttgtgcgagagattatggcggaaatgcatccttccgataattcctcaaact 35193306  T

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Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 565 - 636
Target Start/End: Original strand, 35228617 - 35228688
Alignment:
Q  565 atacctttttaccatggtcaatgatcacagggcgatcagatagggcgagataaagatcctttttggtaggaa 636  Q
    ||||||||||||||| ||| ||||| | ||||||||||||||| || | ||| ||||| |||||||||||||    
T  35228617 atacctttttaccattgtcgatgatgatagggcgatcagatagagcaatatagagatcttttttggtaggaa 35228688  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 747 - 829
Target Start/End: Original strand, 35249955 - 35250037
Alignment:
Q  747 gaaatgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggcaatgcacccttctgccaattcctcaaa 829  Q
    |||| |||||||||| |  |||||||||||||||| || ||||| ||||||| |||||||||| |||| | |||||| |||||    
T  35249955 gaaacgagggagagtctgacggcgtcaacgggagtcgttcgagagagtatggcggcaatgcactcttccggcaattcatcaaa 35250037  T

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Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 659
Target Start/End: Original strand, 35207111 - 35207204
Alignment:
Q  566 tacctttttaccatggtcaatgatcacagggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgt 659  Q
    |||||||| ||||||  ||||||| | ||| |||||||| || |||||||| ||| |||||||||| ||||  ||| |||| ||||||||||||    
T  35207111 taccttttgaccatgagcaatgatgataggacgatcagagagagcgagatagagagcctttttggttggaatgttggcaagtgaaggagattgt 35207204  T

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Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 476
Target Start/End: Original strand, 35253958 - 35254007
Alignment:
Q  427 taacactttttcccactctttctctccaattgaaagctctgcatttcaat 476  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  35253958 taacaattttttccactctttctatccaattgaaaactctgcatttcaat 35254007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 664
Target Start/End: Original strand, 35265522 - 35265621
Alignment:
Q  565 atacctttttaccatggtcaatgatcacagggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgtaagat 664  Q
    ||||||||||| |||| || ||||| | ||| |||||||| || |||||||| ||| | |||||||||||| | ||| |||| |||||||| ||| ||||    
T  35265522 atacctttttatcatgatcgatgatgataggacgatcagagagagcgagatacagagcttttttggtaggagcgttggcaagtgaaggagagtgtgagat 35265621  T

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Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 19267433 - 19267395
Alignment:
Q  399 aatagtgagagatctagcagcaagcatataacacttttt 437  Q
    |||||||||||||||||||||||| || |||||||||||    
T  19267433 aatagtgagagatctagcagcaagaatgtaacacttttt 19267395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 339 - 425
Target Start/End: Original strand, 35148863 - 35148949
Alignment:
Q  339 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcat 425  Q
    |||||||||||| ||| |||||  |||||||||||||| ||||| |   |||||||||  |||  ||||||||||||||| ||||||    
T  35148863 agctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcat 35148949  T

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Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 661 - 831
Target Start/End: Original strand, 35203487 - 35203657
Alignment:
Q  661 agattatagagtcaatgaaaggagaatgaggaggtagaaagcgatcccagacatcgtcggagttggcagcagaatggaaagttttggaaatgagggagag 760  Q
    |||| |||||||| |||||| ||||||  | ||| |||||  ||| ||||||  ||||||| | ||| |||||| | |  || |||||||  | ||||||    
T  35203487 agatgatagagtcgatgaaatgagaatcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaattgtcttggaaacaacggagag 35203586  T
Q  761 ttttccggcgtcaacgggagttgtacgagacagtatggtggcaatgcacccttctgccaattcctcaaact 831  Q
    | | ||||||||| | |||||||| ||||| || |||| || |||||| ||||| | ||||||||||||||    
T  35203587 tctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatccttccggcaattcctcaaact 35203657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 35219490 - 35219528
Alignment:
Q  33 gaagctcagcaacttcggggaacctgtccaaaatttgtg 71  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  35219490 gaagctcaacaacttcagggaacctgtccaaaatttgtg 35219528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 744 - 841
Target Start/End: Original strand, 35477300 - 35477397
Alignment:
Q  744 ttggaaatgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggcaatgcacccttctgccaattcctcaaactttaccattct 841  Q
    ||||||| || ||||| | | ||||||||| | ||||| |||| ||| ||||||| ||||||||||||||| |  ||||| ||||||  |||||||||    
T  35477300 ttggaaacgacggagaatctgccggcgtcagctggagtggtacaagatagtatggcggcaatgcacccttccggtaattcttcaaacgctaccattct 35477397  T

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Target: chr2 (Bit Score: 53; Significance: 7e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 33137708 - 33137636
Alignment:
Q  403 gtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| | |||||||||||||||||||||||    
T  33137708 gtgagagatctagcagcaagcatgtaacacttttgtccactctttctgtgcaattgaaagctctgcatttcaa 33137636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 633
Target Start/End: Complemental strand, 33136842 - 33136774
Alignment:
Q  565 atacctttttaccatggtcaatgatcacagggcgatcagatagggcgagataaagatcctttttggtag 633  Q
    ||||||||||||||| ||| ||||| | | ||||||||||||| |||||||||||| | ||||||||||    
T  33136842 atacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtag 33136774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 653
Target Start/End: Complemental strand, 18558332 - 18558273
Alignment:
Q  594 gggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaagga 653  Q
    ||||||||||||||||||||||| ||| |||||||||| ||| | ||| ||| |||||||    
T  18558332 gggcgatcagatagggcgagatagagagcctttttggttggagcgttggcaatggaagga 18558273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 723 - 842
Target Start/End: Original strand, 38633791 - 38633910
Alignment:
Q  723 ttggcagcagaatggaaagttttggaaatgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggcaatgcacccttctgccaatt 822  Q
    ||||| ||||||||||| || ||  ||| |||||||||| |||| |||||||| ||||| ||||||||||||||  ||||||||||| |||| | || ||    
T  38633791 ttggcggcagaatggaatgtcttacaaacgagggagagtcttcccgcgtcaaccggagtcgtacgagacagtataatggcaatgcactcttccggcagtt 38633890  T
Q  823 cctcaaactttaccattctt 842  Q
    |||||||| || ||||||||    
T  38633891 cctcaaacattgccattctt 38633910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 38632250 - 38632308
Alignment:
Q  6 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaa 64  Q
    |||||||||||||| | | |||| ||||||||||||||||||| |||||||||||||||    
T  38632250 cacgaatttcaagcgaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 38632308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 38634986 - 38635070
Alignment:
Q  6 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagata 90  Q
    |||||||||||||| | | | ||  ||||| |||| ||||||| ||||||||||||||||||||||  |||||||||||| ||||    
T  38634986 cacgaatttcaagcgaaaacgcattacgaatctcaacaacttcagggaacctgtccaaaatttgtgcacaaaagttgcaatgata 38635070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 38635326 - 38635371
Alignment:
Q  404 tgagagatctagcagcaagcatataacactttttcccactctttct 449  Q
    |||||||| |||||||||| || ||||||||||| |||||||||||    
T  38635326 tgagagatttagcagcaagaatgtaacacttttttccactctttct 38635371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 17663938 - 17663857
Alignment:
Q  394 caattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    |||| ||| ||||||||||||||||||||||  |||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  17663938 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 17663857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 19246439 - 19246358
Alignment:
Q  394 caattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    |||| ||| ||||||||||||||||||||||  |||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  19246439 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 19246358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 388 - 498
Target Start/End: Complemental strand, 899004 - 898894
Alignment:
Q  388 tcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttca-atatttccaaag 486  Q
    ||||| |||| ||| ||||||||||| ||||||||||| |||||  |||| ||||| || || ||||||| ||||||||| |||||| ||| ||| || |    
T  899004 tcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttcatata-ttcaaagg 898906  T
Q  487 cttattagcatt 498  Q
    ||||||||||||    
T  898905 cttattagcatt 898894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 53921180 - 53921108
Alignment:
Q  403 gtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    |||||||  ||||||| ||||||  |||| ||||||||||||||||| ||||||||||   ||||||||||||    
T  53921180 gtgagagccctagcagaaagcatgcaacattttttcccactctttctatccaattgaataatctgcatttcaa 53921108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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