View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5380-Insertion-5 (Length: 670)

Name: NF5380-Insertion-5
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5380-Insertion-5
NF5380-Insertion-5
[»] chr4 (3 HSPs)
chr4 (24-670)||(55244574-55245222)
chr4 (101-166)||(22683923-22683988)
chr4 (99-188)||(55927709-55927798)
[»] chr6 (7 HSPs)
chr6 (101-168)||(34620945-34621012)
chr6 (101-168)||(34748382-34748449)
chr6 (97-168)||(882741-882812)
chr6 (101-168)||(32888916-32888983)
chr6 (128-173)||(28466938-28466983)
chr6 (99-188)||(31305786-31305875)
chr6 (128-173)||(34736750-34736795)
[»] chr1 (4 HSPs)
chr1 (103-168)||(48548973-48549038)
chr1 (100-143)||(1514401-1514444)
chr1 (100-165)||(28464957-28465022)
chr1 (100-188)||(7524171-7524259)
[»] scaffold0361 (1 HSPs)
scaffold0361 (99-168)||(14073-14142)
[»] chr3 (2 HSPs)
chr3 (102-199)||(37334962-37335059)
chr3 (99-164)||(46853497-46853562)
[»] chr8 (6 HSPs)
chr8 (100-199)||(32927950-32928049)
chr8 (106-163)||(42458295-42458352)
chr8 (101-168)||(4950542-4950609)
chr8 (100-166)||(16972025-16972091)
chr8 (99-185)||(36447690-36447776)
chr8 (111-156)||(43492208-43492253)
[»] chr5 (5 HSPs)
chr5 (99-166)||(117457-117524)
chr5 (101-168)||(4306571-4306638)
chr5 (99-173)||(35138977-35139051)
chr5 (101-166)||(10372957-10373022)
chr5 (106-158)||(42858322-42858374)
[»] chr2 (6 HSPs)
chr2 (99-185)||(40401585-40401671)
chr2 (100-166)||(16518836-16518902)
chr2 (102-168)||(42973219-42973285)
chr2 (99-168)||(1976823-1976892)
chr2 (97-141)||(7297066-7297110)
chr2 (102-166)||(15220822-15220886)
[»] chr7 (3 HSPs)
chr7 (99-168)||(40561717-40561786)
chr7 (99-166)||(27571919-27571986)
chr7 (99-166)||(45005077-45005144)


Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 24 - 670
Target Start/End: Original strand, 55244574 - 55245222
Alignment:
Q  24 tatgacatgttctattgtcgattttgcctttaggaatatatttgatggtatttattatacaattaacttgaatattcaaatttattcttcaacttatttt 123  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  55244574 tatgacatgttgtattgtcgattttgcctttaggaatatatttgatggtatttattatacaattaacttgaatacttaaatttattcttcaacttatttt 55244673  T
Q  124 tacataaatgtatccaaacattaaccattttaccttcaactcaatattagttggaaccaattttagatgatcaatttacgcaaattaatttttgccaaca 223  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  55244674 tacataaatgtatccaaacattaaccattttatcttcaactcaatgttagtcggaaccaattttagatgatcaatttacacaaattaatttttgccaaca 55244773  T
Q  224 caaagcaaacaaacatataatctacttggtgaaaagacccgaattattttatattttaataacatacacatgatatacaaacaagctagctagttagcta 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55244774 caaagcaaacaaacatataatctacttggtgaaaagacccgaattattttatattttaataacatacacatgatatacaaacaagctagctagttagcta 55244873  T
Q  324 gttagtttgtacttgtacttggccaccataataaatagtacaacaaacattacctgcaactgagaaattaataataaaattggagtcgaaaagccaaagc 423  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  55244874 gttagtttgtacttgtacttggccaacataataaatagtacaacaaacattgcctgcaactgagaaattaaacataaaattggagtcgaaaagccaaagc 55244973  T
Q  424 acaagatgattgatgtgatatatagctgaaggtgatgtaaac-aagtaagagaaaaaggtgaaggttgagatcagatgaatttatcaatgaaatgaaata 522  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    ||    
T  55244974 acaagatgattgatgtcatatatagctgaaggtgatgtaaacaaagtaagagaaaaaggtgaaggttgagatgagatgaatttatgaatgaaatatggta 55245073  T
Q  523 -tggtaagcagaaaaagtaatgaaaccctcgtttcgtttcacttgaccaaaagaaaggaccagtacttggtagccacgatgtgtccctatcttcatgtga 621  Q
     |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55245074 gtcccaagcagaaaaagtaatgaaaccctcgtttcgtttcacttgaccaaaagaaaggaccagtacttggtagccacgatgtgtccctatcttcatgtga 55245173  T
Q  622 aacagtgtctttttccttaccttcttttacactagaaaacaatcttaat 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55245174 aacagtgtctttttccttaccttcttttacactagaaaacaatcttaat 55245222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 22683923 - 22683988
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactca 166  Q
    ||||||||| |||||||   |||||||||||||| ||||||||| ||||||||||| |||||||||    
T  22683923 aaatttattgttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactca 22683988  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 55927798 - 55927709
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaatattagttggaaccaatttta 188  Q
    ||||||||||| ||||| | | |||||||| ||||||||||||||| || ||  ||| || ||||||||| |||  ||||| ||||||||    
T  55927798 tcaaatttattgttcaagtcacttttacatgaatgtatccaaacataaatcacattaactccaactcaattttaactggaatcaatttta 55927709  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 34620945 - 34621012
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    ||||||||| ||||||| | |||||||||||||||||||||||| || || |||||||||||||||||    
T  34620945 aaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaat 34621012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 34748382 - 34748449
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    ||||||||| ||||||| | |||||||||||||||||||||||| || || |||||||||||||||||    
T  34748382 aaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaat 34748449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 882741 - 882812
Alignment:
Q  97 attcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    ||||||||||||| || |||| | |||| ||| ||||||||||||||| || ||||||||||||||||||||    
T  882741 attcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaat 882812  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 32888983 - 32888916
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    ||||||||| ||||||| | |||||||||||| ||| ||||||| || ||||||| ||||||||||||    
T  32888983 aaatttattgttcaactcacttttacataaatatattcaaacataaatcattttatcttcaactcaat 32888916  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 28466983 - 28466938
Alignment:
Q  128 taaatgtatccaaacattaaccattttaccttcaactcaatattag 173  Q
    ||||||||||||||||| ||||| | ||||||||||||||| ||||    
T  28466983 taaatgtatccaaacataaaccactataccttcaactcaattttag 28466938  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 31305875 - 31305786
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaatattagttggaaccaatttta 188  Q
    |||||||||||  |||||| | |||||||| ||| ||||||||||| ||  |||||||||||||| |  | ||||| |||| ||||||||    
T  31305875 tcaaatttattgatcaactcacttttacattaatatatccaaacataaatgattttaccttcaacacccttttagtcggaatcaatttta 31305786  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 34736750 - 34736795
Alignment:
Q  128 taaatgtatccaaacattaaccattttaccttcaactcaatattag 173  Q
    ||||||||||||||||| ||||| | ||||||||||||||| ||||    
T  34736750 taaatgtatccaaacataaaccactataccttcaactcaattttag 34736795  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 48549038 - 48548973
Alignment:
Q  103 atttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    ||||||| ||||||| | ||||||||||||||||| |||||| || ||||||||||||||||||||    
T  48549038 atttattgttcaactcacttttacataaatgtatcaaaacataaatcattttaccttcaactcaat 48548973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 1514401 - 1514444
Alignment:
Q  100 caaatttattcttcaacttatttttacataaatgtatccaaaca 143  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||    
T  1514401 caaatttattgttcaactcatttttacatgaatgtatccaaaca 1514444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 28465022 - 28464957
Alignment:
Q  100 caaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactc 165  Q
    |||||||||| ||||||  |||||||||||||||||  ||||||| || ||| |||| ||||||||    
T  28465022 caaatttattgttcaacccatttttacataaatgtacacaaacataaatcatgttacattcaactc 28464957  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 7524171 - 7524259
Alignment:
Q  100 caaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaatattagttggaaccaatttta 188  Q
    |||||||||  ||||||| | |||||||||||||| ||||||||  || || |||||||| | |||| | |||||| ||| ||||||||    
T  7524171 caaatttatagttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaatttta 7524259  T

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Target: scaffold0361 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 14142 - 14073
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    ||||||||||| ||||||| | ||| |||| ||||||||||||||| || || |||||||||||||||||    
T  14142 tcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactcaat 14073  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 37335059 - 37334962
Alignment:
Q  102 aatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaatattagttggaaccaattttagatgatcaatt 199  Q
    |||| ||| ||||||| ||||||| || ||||||| || |||| || || ||||||||||||||||| ||||| |||| |||||||| || |||||||    
T  37335059 aattcattgttcaactcatttttatatgaatgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaattttatataatcaatt 37334962  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 46853562 - 46853497
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaact 164  Q
    ||||||||||| ||||||| | |||||||||||| |||||  |||| || || |||||||||||||    
T  46853562 tcaaatttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttcaact 46853497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 32927950 - 32928049
Alignment:
Q  100 caaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaatattagttggaaccaattttagatgatcaatt 199  Q
    |||||||||  ||||||| | |||||||| ||||||||||||||  || || ||| ||||||||||||| |||||  ||| |||||||| || |||||||    
T  32927950 caaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaatt 32928049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 42458352 - 42458295
Alignment:
Q  106 tattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaac 163  Q
    |||| ||||||| |||||||||| ||||||||| ||||| ||| ||||||||||||||    
T  42458352 tattgttcaactcatttttacatgaatgtatccgaacataaactattttaccttcaac 42458295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 4950542 - 4950609
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    ||||||||| ||||||| | |||  ||||||| ||||||||||| || || |||||||||||||||||    
T  4950542 aaatttatttttcaactcactttctcataaatatatccaaacataaatcactttaccttcaactcaat 4950609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 16972091 - 16972025
Alignment:
Q  100 caaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactca 166  Q
    |||||||||| ||||| | | |||||||| ||||||| ||||||  || ||||||||||||||||||    
T  16972091 caaatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactca 16972025  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 36447776 - 36447690
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaatattagttggaaccaatt 185  Q
    ||||||||||| ||||||| | || |||||||||||||| |||||  || |||||||  ||||||||| | ||||| |||| |||||    
T  36447776 tcaaatttattattcaactcagttatacataaatgtatctaaacacaaatcattttatattcaactcacttttagtcggaatcaatt 36447690  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 43492253 - 43492208
Alignment:
Q  111 ttcaacttatttttacataaatgtatccaaacattaaccattttac 156  Q
    ||||||||| |||||||| ||||||||||||||| || ||||||||    
T  43492253 ttcaacttacttttacatgaatgtatccaaacataaatcattttac 43492208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 117524 - 117457
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactca 166  Q
    |||||| |||| || |||| | ||||||||| |||||||||||||| || ||||||||||||||||||    
T  117524 tcaaatgtattgtttaactcacttttacatagatgtatccaaacatgaatcattttaccttcaactca 117457  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 4306571 - 4306638
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    ||||||||| ||||| |  ||||||||| ||||||||||||||| || |||||||| |||||||||||    
T  4306571 aaatttattgttcaattcttttttacatgaatgtatccaaacataaatcattttacattcaactcaat 4306638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 35139051 - 35138977
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaatattag 173  Q
    ||||||||||| ||||||| | ||| | || ||||||||  ||||| || |||||||||||||||||||| ||||    
T  35139051 tcaaatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttag 35138977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 10372957 - 10373022
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactca 166  Q
    ||||||||| ||||||||| |||    ||||||||||||||||| ||||| ||||| |||||||||    
T  10372957 aaatttattgttcaacttactttcgtgtaaatgtatccaaacataaaccagtttacattcaactca 10373022  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 42858374 - 42858322
Alignment:
Q  106 tattcttcaacttatttttacataaatgtatccaaacattaaccattttacct 158  Q
    |||| ||||||||| |||||||| |||||||||||| || ||||| |||||||    
T  42858374 tattgttcaacttacttttacattaatgtatccaaatataaaccactttacct 42858322  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 40401671 - 40401585
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaatattagttggaaccaatt 185  Q
    |||| |||||| ||||||| | |||||||| ||||||||||||||| ||  | | ||||||||||||| | ||||| ||||||||||    
T  40401671 tcaagtttattgttcaactgacttttacatgaatgtatccaaacataaattagtctaccttcaactcatttttagtaggaaccaatt 40401585  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 16518836 - 16518902
Alignment:
Q  100 caaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactca 166  Q
    |||||||||  ||||||| | |||||||| ||||||||||||||  || ||||||||| ||||||||    
T  16518836 caaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactca 16518902  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 42973219 - 42973285
Alignment:
Q  102 aatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    |||||||| ||||||| ||||||||||||||||||   ||||| |||||||| || || ||||||||    
T  42973219 aatttattattcaactcatttttacataaatgtatattaacataaaccatttcacattaaactcaat 42973285  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 1976892 - 1976823
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    ||||||||||| || |||| | |||||||| ||||||||||||||| |  |  |||||||||||||||||    
T  1976892 tcaaatttattgttgaactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactcaat 1976823  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 7297066 - 7297110
Alignment:
Q  97 attcaaatttattcttcaacttatttttacataaatgtatccaaa 141  Q
    ||||||||||||| ||||||||| ||||||||| |||||| ||||    
T  7297066 attcaaatttattgttcaacttacttttacatatatgtattcaaa 7297110  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 15220886 - 15220822
Alignment:
Q  102 aatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactca 166  Q
    |||||||| ||||||| | ||| |||| ||||||||||||||| || || ||||| |||||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactca 15220822  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 40561786 - 40561717
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactcaat 168  Q
    |||||| |||| ||||||| | |||||||| ||||||||||||||| || || ||||| |||||||||||    
T  40561786 tcaaatatattgttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaat 40561717  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 27571919 - 27571986
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactca 166  Q
    |||| |||||| ||||||| |  ||||||||||||||||||| ||| || ||||||||||| ||||||    
T  27571919 tcaagtttattattcaactcacatttacataaatgtatccaaccataaatcattttacctttaactca 27571986  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 45005077 - 45005144
Alignment:
Q  99 tcaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttaccttcaactca 166  Q
    ||||||||||| ||||||| | |||||||||||| |||| |||||| || |  |||||||||||||||    
T  45005077 tcaaatttattattcaactcacttttacataaatatatcaaaacatcaatcggtttaccttcaactca 45005144  T

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