View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5380-Insertion-6 (Length: 497)
Name: NF5380-Insertion-6
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5380-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 7 - 497
Target Start/End: Complemental strand, 34860426 - 34859936
Alignment:
| Q |
7 |
agatattagctggcttgccttgacatgatggataatttctctattttaacaatcttccctacataaatactactctatctgttgcataaatactctcggt |
106 |
Q |
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| T |
34860426 |
agatattagctggcttgccttgacatgatggataatttctctattttaacagtcttccctacataaatactactctatctgttgcataaatactctcggt |
34860327 |
T |
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| Q |
107 |
gatgaatccaccaagaaaatttgcaagtaaaccttcagaaaggaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattg |
206 |
Q |
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| T |
34860326 |
gatgaatccaccaagaaaatttgcaagtaaaccttcagaaaggaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattg |
34860227 |
T |
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| Q |
207 |
aatgtcattcattacaagaatcaaatatttgcaagtcattggatttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgatta |
306 |
Q |
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| T |
34860226 |
aatgtcattcattacaagaatcaaatatttgcaagtcattggatttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgatta |
34860127 |
T |
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| Q |
307 |
taggttccttctcatgtgttgatgatagcgctacttttcccgttacttcacttgaggatgctcgtagaattccataggatctattgtctcttatgtgtag |
406 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34860126 |
taggttccttctcatgtgctgatgatagcgctacttttcccgttacttcacttgaggatgctcgtagaattccataggatctattgtcgcttatgtgtag |
34860027 |
T |
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| Q |
407 |
gtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaagctagatgtttttgaagatccttattgctcgtct |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860026 |
gtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaagctagatgtttttgaagatccttattgctcgtct |
34859936 |
T |
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