View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5380-Insertion-7 (Length: 476)
Name: NF5380-Insertion-7
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5380-Insertion-7 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 171 - 476
Target Start/End: Complemental strand, 2101806 - 2101500
Alignment:
| Q |
171 |
taataacactggttacaccaccaaaaactta-gacacataagattcaaatcgggtaaaagtgttcacacctaacatgtgtagtgtctaataagttagttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2101806 |
taataacactggttacaccaccaaaaacttaagacacataagattcaaatcgggtaaaagtgt-cacacctaacatgtgtagtgtctaataaattagttc |
2101708 |
T |
|
| Q |
270 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaa-tcatataagccggtaaatataaactataagctcatgaaaacgtg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
2101707 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaaatcatataagcctgtaaatataaactataagctcgtgaaaacgtg |
2101608 |
T |
|
| Q |
369 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2101607 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaatttgcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
2101508 |
T |
|
| Q |
469 |
gattcacc |
476 |
Q |
| |
|
|||||||| |
|
|
| T |
2101507 |
gattcacc |
2101500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 2102250 - 2102059
Alignment:
| Q |
8 |
gatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaagattttgtttatgtt-acttcatagataaa--------------------- |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2102250 |
gatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaagattttgtttatgtttacttcatagataaaatagagttatcatgatataaa |
2102151 |
T |
|
| Q |
86 |
ccttag-agttaaacatgacgggcaactccttatagaggatatcaatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
176 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102150 |
ccttaggagttaaacatgatgggcaacgccttatagaggatatcaatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
2102059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 327 - 453
Target Start/End: Original strand, 39184928 - 39185054
Alignment:
| Q |
327 |
atataagccggtaaatataaactataagctcatgaaaacgtgaaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtt |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
39184928 |
atataagccggtaaatataaactataagctcttgaaaacgtgaaaattacaaaacaaaactcttttaaaagcttataaaacataatccaaatttgcggtt |
39185027 |
T |
|
| Q |
427 |
tgccaaacagatcctaatcattcataa |
453 |
Q |
| |
|
||||||||||||||||| |||| |||| |
|
|
| T |
39185028 |
tgccaaacagatcctaaccattgataa |
39185054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 39183829 - 39183883
Alignment:
| Q |
8 |
gatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaagatttt |
62 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
39183829 |
gatttccactggatgctccatcaaattctaggatacaagaacgctgcaagatttt |
39183883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 39184848 - 39184892
Alignment:
| Q |
267 |
ttcaactaaagctacaaggttaaaattgagaatgaaaaatgataa |
311 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39184848 |
ttcaattaaagctacaaggttaaaattgagaatgaaaaatgataa |
39184892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 39184394 - 39184433
Alignment:
| Q |
171 |
taataacactggttacaccaccaaaaacttagacacataa |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39184394 |
taataacactagttacaccaccaaaaacttagacacataa |
39184433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 39183919 - 39183970
Alignment:
| Q |
81 |
ataaaccttag-agttaaacatgacgggcaactccttatagaggatatcaat |
131 |
Q |
| |
|
||||||||||| ||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
39183919 |
ataaaccttaggagttaaatacgacgggcaacaccttatagaggatatcaat |
39183970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 4952169 - 4952228
Alignment:
| Q |
26 |
catcaaattcaaggatgcaagaacgctgcaagattttgtttatgttacttcatagataaa |
85 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4952169 |
catcaaattcaaggatacaagaacgctgcaagattttgtttatgttatctcataaataaa |
4952228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University