View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5380-Insertion-9 (Length: 301)

Name: NF5380-Insertion-9
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5380-Insertion-9
NF5380-Insertion-9
[»] chr6 (1 HSPs)
chr6 (10-301)||(34797302-34797592)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 34797302 - 34797592
Alignment:
Q  10 gaatttcaggtatgctttgttccacctataactattcaggcaaattttaggtatgctttgagaatgattatctattgatcattgtcattggcttggctgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34797302 gaatttcaggtatgctttgttccacctataactattcaggcaaattttaggtatgctttgagaatgattatctattgatcattgtcattggcttggctgt 34797401  T
Q  110 ctactagattaaatgaatgctttgattttatatcaattataagatagaaggtgatgctatcnnnnnnntttatcacctcttgcctactaaattaaacaca 209  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |       ||||||||||||||||||||||||||||||||    
T  34797402 ctactatattaaatgaatgctttgattttatatcaattataagatagaaggtgatgctcacaaaaaaatttatcacctcttgcctactaaattaaacaca 34797501  T
Q  210 aatgaaactaacattggtgcgataagnnnnnnnnnccataggttatgtatttattgcacctataaactgaggaagggagaaaaagcataatt 301  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34797502 aatgaaactaacattggtgcgataag-aaaaaaaaccataggttatgtatttattgcacctataaactgaggaagggagaaaaagcataatt 34797592  T

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