View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5380_low_1 (Length: 627)
Name: NF5380_low_1
Description: NF5380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5380_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 7e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 72 - 265
Target Start/End: Complemental strand, 29816707 - 29816514
Alignment:
| Q |
72 |
aattgggatatgagttgtgtgctctcacaatcccgtagccacatatatgtcgttggattaaaattggacggttcatatgcggctgagtacgtgcgatcac |
171 |
Q |
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| T |
29816707 |
aattgggatatgagttgtgtgctgtcacaatcccgtagccacgtctatgtcgttggatcaagattggacgattcatatggggctgactgcgtgcagtcac |
29816608 |
T |
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| Q |
172 |
actgtacacggttgagatgcaaacaattttccatgatttcaaaatctattgagtcaaaataaattaatgctagcaccccaataaaggaaaaaag |
265 |
Q |
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| T |
29816607 |
actgtacacggttgaaatcccaacaattttccatgatttcaaaatcactagagtcaaaataaattaatcctagcaccccaagaaaggaaaaaag |
29816514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 413 - 483
Target Start/End: Complemental strand, 29815548 - 29815480
Alignment:
| Q |
413 |
aaagtgggattagaagcatgcatttttgtaaattataaggactaacaccaagagaatgtagggactaagac |
483 |
Q |
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| T |
29815548 |
aaagtggaattagaagcatgcatttttgtaaattatatggacta--accaagagaatgtagggactaagac |
29815480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 29815928 - 29815888
Alignment:
| Q |
261 |
aaaagtattggtaaaataggtgttgaagtgacagtgtatca |
301 |
Q |
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| T |
29815928 |
aaaagtattggtaaaataggagttgaagggaaagtgtatca |
29815888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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