View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5380_low_3 (Length: 239)
Name: NF5380_low_3
Description: NF5380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5380_low_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13219533 - 13219764
Alignment:
| Q |
1 |
tactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattat |
100 |
Q |
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| T |
13219533 |
tactactcaagctgcgttatatactcatcatcaatacattgcaggatttattatgacaggggcttttgctcatggagcgatattttttattcgggattac |
13219632 |
T |
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| Q |
101 |
aatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttcc |
200 |
Q |
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| T |
13219633 |
aatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttcc |
13219732 |
T |
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| Q |
201 |
atactttgggactttatgtccatgatgatgtc |
232 |
Q |
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| T |
13219733 |
atactttgggactttatgtccataatgatgtc |
13219764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47842106 - 47842150
Alignment:
| Q |
1 |
tactactcaagctgcgttatatactcatcatcaatacattgcagg |
45 |
Q |
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| T |
47842106 |
tactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47842187 - 47842226
Alignment:
| Q |
1 |
tactactcaagctgcgttatatactcatcatcaatacatt |
40 |
Q |
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| T |
47842187 |
tactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
61 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
121 |
Q |
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| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 10996451 - 10996673
Alignment:
| Q |
6 |
ctcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcc |
105 |
Q |
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| T |
10996451 |
ctcaagctgcggtatatactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatggaacgatattttt-atttgagattacaatcc |
10996549 |
T |
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| Q |
106 |
cgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatact |
205 |
Q |
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| T |
10996550 |
cgaacataatgagaataatgtattggcag--atgttagagcacaaagaagctatcatatcccatttaagttgagccatcctatttctagggttccatact |
10996647 |
T |
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| Q |
206 |
ttgggactttatgtccatgatgatgt |
231 |
Q |
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| T |
10996648 |
ttgggactttatgtccataatgatgt |
10996673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
4 |
tactcaagctgcgttatatactcatcatcaatacattgc |
42 |
Q |
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| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 238176 - 237958
Alignment:
| Q |
1 |
tactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattat |
100 |
Q |
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| T |
238176 |
tactactcaagctgctttatatactcatcaccaatatattgcggggttcatcatgacaggggcttttgctcatggagctatttttttcattagggattac |
238077 |
T |
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| Q |
101 |
aatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttcc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| || |||| |
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| T |
238076 |
aatccggaacagaatgaggataatgtattggcaagaatgttagaccataaagaagctatcatatctcatttaagttgggctagcctctttctaggattcc |
237977 |
T |
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| Q |
201 |
atactttgggactttatgt |
219 |
Q |
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|||| ||||| |||||||| |
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| T |
237976 |
ataccttgggcctttatgt |
237958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
4 |
tactcaagctgcgttatatactcatcatcaatacattgc |
42 |
Q |
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|||||||||||| ||||||| |||||||||||||||||| |
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| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
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