View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5381_high_12 (Length: 365)
Name: NF5381_high_12
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 2274531 - 2274384
Alignment:
| Q |
76 |
ctgtgatgtttgttactgcacacacctatttaagtcgcaacctattcagtcaaagtacaaacaaaagagtcgtcaacctatattcaccaaatgaagctct |
175 |
Q |
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| T |
2274531 |
ctgtgatgtttgttactgcacacacctatttaagtcgcaacctatccagtcaaagtacaaacaaaagagtcgtcaacctatattcaccaaatgaagctct |
2274432 |
T |
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| Q |
176 |
gtgtgtgctgccaaataatggattcaattaatcagtggtaatcaaatc |
223 |
Q |
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| T |
2274431 |
gtgtgtgctgccaaataatggattcaattaatcagtggtaatcaaatc |
2274384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 2272950 - 2272828
Alignment:
| Q |
101 |
ctatttaagtcgcaacctattcagtcaaagtacaaacaaaagagtcgtcaacctatattcaccaaatgaagctctgtgtgtgctgccaaataatggattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272950 |
ctatttaagtcgcaacctattcagtcaaagtacaaacaaaagagtcgtcaacctatattcaccaaatgaagctctgtgtgtgctgccaaataatggattc |
2272851 |
T |
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| Q |
201 |
aattaatcagtggtaatcaaatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2272850 |
aattaatcagtggtaatcaaatc |
2272828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 2274304 - 2274241
Alignment:
| Q |
302 |
ctcaattaatgtatgtttctaatctcactatttaggtacatgatcagagacatcgacaaagatc |
365 |
Q |
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| T |
2274304 |
ctcaattaatgtatgtttctaatctcactatttaggtacatgatcagagacatcgacaaagatc |
2274241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 2272748 - 2272683
Alignment:
| Q |
302 |
ctcaattaatgtat--gtttctaatctcactatttaggtacatgatcagagacatcgacaaagatc |
365 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2272748 |
ctcaattaatgtatatgtttctaatctcactatttaggtacatgatgagagacatcgacaaagatc |
2272683 |
T |
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