View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5381_high_2 (Length: 604)
Name: NF5381_high_2
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 336 - 528
Target Start/End: Complemental strand, 5973924 - 5973735
Alignment:
| Q |
336 |
tttactctttagaacccttctgtttacnnnnnnncaataaactttaactctatacacgcggcgatgttactttgcaaaatcacttgattacatataaaag |
435 |
Q |
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| T |
5973924 |
tttactctttagaacccttatgattactttttttcaataaactttaactttatacacgcggcgatgttactttgcaaaatcacttgattacata---aag |
5973828 |
T |
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| Q |
436 |
gggatgcattaagaaaaaatgggattcttcatcccttcttatcccctaattgcagcccttcttcctcattgattcttcttcttccgttcttcc |
528 |
Q |
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| T |
5973827 |
gggatgcattaagaaaaaatgggattcttcatcctttcttatcccctaattgcagcccttcttcctcattgattcttcttcttccgttcttcc |
5973735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 5974830 - 5974704
Alignment:
| Q |
11 |
catcatcatctaaaggcattgtagactggaagcattctctacttaccatcatttaatctaatcaattctcaattttctttgctaccatgaatcattacta |
110 |
Q |
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| T |
5974830 |
catcatcatctaaaggcattgtagactggaagcattctctacttaccatcatttaatctaatcaattctcaattttctttgctaccatgaatcattacta |
5974731 |
T |
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| Q |
111 |
gttttctttctaggaaaaataatcaaa |
137 |
Q |
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| T |
5974730 |
gttttctttctaggaaaaataatcaaa |
5974704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 5974035 - 5973947
Alignment:
| Q |
247 |
aatgtttattaaagacttaattgagcacaccatcctt-aacttatttctttatttatttattttggtctaataactcataaaagttttatttt |
338 |
Q |
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| T |
5974035 |
aatgtttattaaagacttaattgaacacacgatcctttaacttattt----atttatttattttggtctaataaatcataaaagttttatttt |
5973947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 26538127 - 26537999
Alignment:
| Q |
9 |
gacatcatcatctaaaggcattgtagactggaagcattctctacttaccatcatttaatctaatcaattctcaattttctttgctaccatgaatcattac |
108 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
26538127 |
gacaacatcatctaaaggcattgtagaccggaagcattctctacttactatcatttaatctaatcaattcttcattttctttgctatcatgaatcattac |
26538028 |
T |
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| Q |
109 |
tagttttctttctaggaaaaataatcaaa |
137 |
Q |
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| T |
26538027 |
tagttttctttctaggaaaaataatcaaa |
26537999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 2461230 - 2461143
Alignment:
| Q |
50 |
tacttaccatcatttaatctaatcaattctcaattttctttgctaccatgaatcattactagttttctttctaggaaaaataatcaaa |
137 |
Q |
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||||||| |||||||||||||||||||| | ||||| ||||||| ||| |||| | ||| ||||||||||| |||| |||||||| |
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| T |
2461230 |
tacttactatcatttaatctaatcaattattgattttaattgctactatggatcaattatagctttctttctagcaaaactaatcaaa |
2461143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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