View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5381_high_20 (Length: 265)
Name: NF5381_high_20
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_high_20 |
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| [»] scaffold2003 (1 HSPs) |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 6913016 - 6913182
Alignment:
| Q |
17 |
acatattaagtccacatgagctcacataaatttctactcactccatagccatttttctgatacaatagaaaattgcaattggaggaacctctttaaattt |
116 |
Q |
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| T |
6913016 |
acatattaagtccacatgaggtcacataaatttctactcactccatagccatttttctgatacaatagaaaattgcaattggaggaacctctttaaattt |
6913115 |
T |
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| Q |
117 |
ccaggaagcaaattgtaaacatgggtattatttctgagatttaaagagaaagttattgttgccatga |
183 |
Q |
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| T |
6913116 |
ccaggaagcaaattgtaaacatgggtattatttctgagatttaaagagaaagttattgttgccatga |
6913182 |
T |
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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 35459196 - 35459291
Alignment:
| Q |
81 |
atagaaaattgcaattggaggaacctctttaaatttccaggaagcaaattgtaaacatgggt----attatttctgagatttaaagagaaagttatt |
173 |
Q |
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| T |
35459196 |
atagaaaattgcaattggaggaaactctttaaattttcaggaagcaaattgtaaa-atgggtgtcaattatttctaaaatttaaagagaaagttatt |
35459291 |
T |
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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 50950495 - 50950590
Alignment:
| Q |
81 |
atagaaaattgcaattggaggaacctctttaaatttccaggaagcaaattgtaaacatgggt----attatttctgagatttaaagagaaagttatt |
173 |
Q |
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| T |
50950495 |
atagaaaattgcaattggaggaaactatttaaattttcagaaagcaaattgtaaa-atgggtgtcaattatttctaagatttaaagagaaagttatt |
50950590 |
T |
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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 43316707 - 43316802
Alignment:
| Q |
81 |
atagaaaattgcaattggaggaacctctttaaatttccaggaagcaaattgtaaacatgggt----attatttctgagatttaaagagaaagttatt |
173 |
Q |
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| T |
43316707 |
atagaaaattgcaattggaggaaaatctttaaattttcaggaagcaaattgtaaa-ataggtgtcaattatttctaagatttaaagcgaaagttatt |
43316802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold2003
Description:
Target: scaffold2003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 1100 - 1140
Alignment:
| Q |
143 |
attatttctgagatttaaagagaaagttattgttgccatga |
183 |
Q |
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| T |
1100 |
attatttctgagatttaaagaggaagttattgttgccatga |
1140 |
T |
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Target: scaffold0150 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 12223 - 12263
Alignment:
| Q |
143 |
attatttctgagatttaaagagaaagttattgttgccatga |
183 |
Q |
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| T |
12223 |
attatttctgagatttaaagaggaagttattgttgccatga |
12263 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 29290675 - 29290715
Alignment:
| Q |
143 |
attatttctgagatttaaagagaaagttattgttgccatga |
183 |
Q |
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| T |
29290675 |
attatttctgagatttaaagaggaagttattgttgccatga |
29290715 |
T |
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