View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5381_high_28 (Length: 243)

Name: NF5381_high_28
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5381_high_28
NF5381_high_28
[»] chr6 (3 HSPs)
chr6 (1-225)||(35026535-35026759)
chr6 (63-122)||(35021403-35021462)
chr6 (1-61)||(1520503-1520563)
[»] chr3 (2 HSPs)
chr3 (4-63)||(34618953-34619012)
chr3 (1-58)||(49089515-49089572)
[»] chr5 (4 HSPs)
chr5 (1-63)||(13858301-13858363)
chr5 (4-57)||(6454471-6454524)
chr5 (3-63)||(13860044-13860104)
chr5 (1-57)||(11664779-11664835)
[»] chr7 (3 HSPs)
chr7 (1-57)||(48572795-48572851)
chr7 (1-57)||(22130594-22130650)
chr7 (1-57)||(40500456-40500512)
[»] chr1 (7 HSPs)
chr1 (3-57)||(12180924-12180978)
chr1 (1-57)||(3447314-3447370)
chr1 (1-57)||(11671060-11671116)
chr1 (1-57)||(12181206-12181262)
chr1 (1-57)||(46135784-46135840)
chr1 (1-57)||(4033192-4033248)
chr1 (1-57)||(3449070-3449126)
[»] chr4 (4 HSPs)
chr4 (1-57)||(36761762-36761818)
chr4 (3-63)||(49408699-49408759)
chr4 (3-57)||(22497971-22498025)
chr4 (3-44)||(42430761-42430802)
[»] chr2 (2 HSPs)
chr2 (4-55)||(37672618-37672671)
chr2 (4-50)||(35549811-35549857)
[»] chr8 (1 HSPs)
chr8 (6-55)||(13014832-13014881)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35026759 - 35026535
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagttataatattatcgcaaagaggaggtaaaagactcttttgttgc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35026759 acgtcaaattttgtaaacatgttcactcgaagctcaagtggtatgtgaaagaggagttataatattatcgcaaagaggaggtaaaagactcttttgtcgc 35026660  T
Q  101 cttctcactagtaaatacaaatagatagccaatagcatcgccaaaccaacaagaggaacaacaattaggatagtttttctcttctctacacaaaacaaat 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35026659 cttctcactagtaaataaaaatagatagccaatagcatcgccaaaccaacaagaggaacaacaattaggatagtttttctcttctctacacaaaacaaat 35026560  T
Q  201 aacatttgttaatctcataatttca 225  Q
    |||||||||||||||||||||||||    
T  35026559 aacatttgttaatctcataatttca 35026535  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 35021462 - 35021403
Alignment:
Q  63 tattatcgcaaagaggaggtaaaagactcttttgttgccttctcactagtaaatacaaat 122  Q
    ||||||| ||||||||||| |||||||||||| ||  |||||||| ||||||||||||||    
T  35021462 tattatcacaaagaggaggcaaaagactctttcgtcaccttctcattagtaaatacaaat 35021403  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1520563 - 1520503
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagttata 61  Q
    ||||||||||| | ||||||| |||||||||| | ||||||||||||||| | ||||||||    
T  1520563 acgtcaaatttcgaaaacatgttcactcgaagtttaagtggtatgcaaataaagagttata 1520503  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 34619012 - 34618953
Alignment:
Q  4 tcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagttataat 63  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  34619012 tcaaattttgtaaacatgttcactcgaagctcaagtggtatgtaaatgaggagtcataat 34618953  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49089515 - 49089572
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagtt 58  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  49089515 acgtcaaattttgtaaacatgttcactcgaagctcaagtgatatgtaaatgaggagtt 49089572  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13858363 - 13858301
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagttataat 63  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||    
T  13858363 acgtcaaattttgtaaacatgttcactcgaagctcaagtggtatgtaaatgatgagtcataat 13858301  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 6454524 - 6454471
Alignment:
Q  4 tcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||    
T  6454524 tcaaattttgtaaacatgttcactcgaagttcaagtggtatgcaaatgaagagt 6454471  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 13860044 - 13860104
Alignment:
Q  3 gtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagttataat 63  Q
    ||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||| |||||    
T  13860044 gtcaaattttgtaaacatgttcatttgaagctcaagtggtatgtaaatgaggagtcataat 13860104  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11664835 - 11664779
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||||||||||| |||||||| | ||||||||||||||||||||| |||||| ||||    
T  11664835 acgtcaaattttataaacatgttaactcgaagctcaagtggtatgtaaatgaagagt 11664779  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 48572851 - 48572795
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||||||||||||||||  || ||||||||||||||||||||||| |||||||||||    
T  48572851 acgtcaaattttgtaaatgtgttcactcgaagctcaagtggtatgtaaatgaggagt 48572795  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22130650 - 22130594
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||| |||||||||||||| | ||| |||||| |||||||||||| ||| |||||||    
T  22130650 acgttaaattttgtaaacacgttcattcgaagttcaagtggtatgtaaacgaggagt 22130594  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40500456 - 40500512
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||| |||||||||||||| | ||| |||||| |||||||||||| ||| |||||||    
T  40500456 acgttaaattttgtaaacacgttcattcgaagttcaagtggtatgtaaacgaggagt 40500512  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 12180978 - 12180924
Alignment:
Q  3 gtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||||||||| |||| ||| | |||||||||||||||||||||||||||||||||    
T  12180978 gtcaaattttttaaaaatgtttactcgaagctcaagtggtatgcaaatgaggagt 12180924  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3447370 - 3447314
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||||||||||| |||||||| |||||| |||||||||||||||| |||||| ||||    
T  3447370 acgtcaaattttataaacatgttcactcaaagctcaagtggtatgtaaatgaagagt 3447314  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11671116 - 11671060
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||||||||||||| |||||  |||| |||||||||||||||||| |||||||||||    
T  11671116 acgtcaaattttgttaacatattcacccgaagctcaagtggtatgtaaatgaggagt 11671060  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12181262 - 12181206
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||||||||||| | |||||||| |||  ||||||||||||||||||||||||||||    
T  12181262 acgtcaaattttttcaacatgcttacttaaagctcaagtggtatgcaaatgaggagt 12181206  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 46135840 - 46135784
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    ||||||||||| ||||||| | |||||||||| ||||||||||||||||||| ||||    
T  46135840 acgtcaaatttcgtaaacacgttcactcgaagttcaagtggtatgcaaatgaagagt 46135784  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4033248 - 4033192
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    ||||||||||||||||||||| ||| || ||||| |||||||||| ||| |||||||    
T  4033248 acgtcaaattttgtaaacatgttcattcaaagcttaagtggtatgtaaacgaggagt 4033192  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3449126 - 3449070
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||| |||||||| ||| ||| |||||| |||||||||||||||| |||||| ||||    
T  3449126 acgttaaattttgcaaatatgttcactcaaagctcaagtggtatgtaaatgaagagt 3449070  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36761762 - 36761818
Alignment:
Q  1 acgtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    |||||||||||||||||| || ||| |||||| |||| |||||||||||||||||||    
T  36761762 acgtcaaattttgtaaacttgttcattcgaagttcaaatggtatgcaaatgaggagt 36761818  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 49408699 - 49408759
Alignment:
Q  3 gtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagttataat 63  Q
    |||||||||| |||||||| ||| ||||| ||||||||||||| ||||||||||| |||||    
T  49408699 gtcaaattttctaaacatgttcattcgaaactcaagtggtatgtaaatgaggagtcataat 49408759  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 22498025 - 22497971
Alignment:
Q  3 gtcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgaggagt 57  Q
    ||||||||||||||| | | |||||||||||| |||||||||| |||||||||||    
T  22498025 gtcaaattttgtaaatacgttcactcgaagcttaagtggtatgtaaatgaggagt 22497971  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 42430761 - 42430802
Alignment:
Q  3 gtcaaattttgtaaacatgctcactcgaagctcaagtggtat 44  Q
    ||||||||||||||||||| ||||| |||||| |||||||||    
T  42430761 gtcaaattttgtaaacatgttcacttgaagctgaagtggtat 42430802  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 37672618 - 37672671
Alignment:
Q  4 tcaaattttgtaaacatgctcactc--gaagctcaagtggtatgcaaatgagga 55  Q
    |||||||||||||| ||||||||||  ||||||||||||||||| |||||||||    
T  37672618 tcaaattttgtaaatatgctcactctcgaagctcaagtggtatgtaaatgagga 37672671  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 35549857 - 35549811
Alignment:
Q  4 tcaaattttgtaaacatgctcactcgaagctcaagtggtatgcaaat 50  Q
    |||||||| |||||| || ||||||||||||||||||||||| ||||    
T  35549857 tcaaatttcgtaaacctgttcactcgaagctcaagtggtatgtaaat 35549811  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 13014881 - 13014832
Alignment:
Q  6 aaattttgtaaacatgctcactcgaagctcaagtggtatgcaaatgagga 55  Q
    |||||||| ||||||| |||||||||||||||||| |||| |||| ||||    
T  13014881 aaattttgaaaacatgttcactcgaagctcaagtgatatgtaaattagga 13014832  T

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