View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5381_high_29 (Length: 242)
Name: NF5381_high_29
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8181908 - 8181678
Alignment:
| Q |
1 |
ttatttctgacaccacctttgttttatatacgtgtttgatgnnnnnnnnnnnnngattgaaggtttgaaaaatgagaaatcacagaactcatatgcatat |
100 |
Q |
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| T |
8181908 |
ttatttctgacaccacctttgttttatatacgtgtttgatttttttttttttttgattgaaggtttgaaaaatgagaaatcacagaactcatatgcatat |
8181809 |
T |
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| Q |
101 |
gttttgcttgattgaaggttcatgaaggaatcttacatcaatatgacaatatcatgaaaaagattgttcatgatgctcttaatctaagtaagatcaattt |
200 |
Q |
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| T |
8181808 |
gttttgcttgattgaaggtttatgaaggaatcttacatcaatatgacaatatcatgaaaaagattgttcatgatgctcttaatctaagtaagatcaattt |
8181709 |
T |
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| Q |
201 |
tgttcttaacctaaagtccaattgtgatgat |
231 |
Q |
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| T |
8181708 |
tgttcttaacctaaagcccaattgtgatgat |
8181678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 55 - 231
Target Start/End: Original strand, 17834308 - 17834484
Alignment:
| Q |
55 |
gattgaaggtttgaaaaatgagaaatcacagaactcatatgcatatgttttgcttgattgaaggttcatgaaggaatcttacatcaatatgacaatatca |
154 |
Q |
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||||||||||||||||||| | |||||||| ||||||| || ||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||| |
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| T |
17834308 |
gattgaaggtttgaaaaatcataaatcacataactcatgtgtatatgttttacttgattaaaggtttatgaagaaatcttacatcaatatgacaatatca |
17834407 |
T |
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| Q |
155 |
tgaaaaagattgttcatgatgctcttaatctaagtaagatcaattttgttcttaacctaaagtccaattgtgatgat |
231 |
Q |
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| T |
17834408 |
agaaaaagattgttcaggatgctcttaatctaaataagatcgattttgttcttaaccttaagcccaattgtgatgat |
17834484 |
T |
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