View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5381_high_3 (Length: 564)
Name: NF5381_high_3
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_high_3 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 9408148 - 9408710
Alignment:
| Q |
1 |
tcactttgatgcttaaccacgtttttagttcatnnnnnnnnnttatttcattcgtcttaaaatatacatcactttaacaaattttacatgaatcaagaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9408148 |
tcactttgatgcttaaccacgtttttagttcataaaaaaaa-ttatttccttcatcttaaaatatacatcactttaacaaattttacatgaatcgagaaa |
9408246 |
T |
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| Q |
101 |
ggtgataaagtttatatgaaaaaggtaaattaagaattactttannnnnnnnnnnnnnggatcgatttccgacccattaaatgtaaacgattaatatgac |
200 |
Q |
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| T |
9408247 |
gatgataaagtttatatgaaaaaggtaaattaagaattactttattttttttgtttttggatcgatttccgacccattaaatgtaaacgattaatatgac |
9408346 |
T |
|
| Q |
201 |
ttatgcatagaggcatgcacattggtcaagcgttgttccctcttgagaatcaaattctgcattcgctacatctttgaaaggagttccttttactactgga |
300 |
Q |
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| T |
9408347 |
tcatgcatagaggcatgcgcattggccaaacattgttccctcctgagaatcaaactcggtattcgctacgtttttggtaggaactccttg--ctaccgga |
9408444 |
T |
|
| Q |
301 |
gctcatacaacttggttaattaagaattactttacaaaatagaaaacgtgttttttccattgtacttataatcccctcgtgaaatttaatgnnnnnnnnn |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9408445 |
gctcaagcaacttggttaattaagaattactttacaaaatagaaaacgtgttttttccattgtacttataatcccctcgtgaaatttaatgttttttttt |
9408544 |
T |
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| Q |
401 |
cttttctattatctcttttgtacttataaccccctcatgaaatttaatgnnnnnnnnnn--ctttctttccattatcacttttgtatggtacagtgatat |
498 |
Q |
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| T |
9408545 |
cttttctattatctcttttgtacttataaccccctcatgaaatttaatgttttttttctttctttctttctattatcacttttgtatggtacagtgatat |
9408644 |
T |
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| Q |
499 |
gggatttttacacctgtatacgaatccaaacgttcgtacactgttaagttacaactcactaaatga |
564 |
Q |
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| T |
9408645 |
gggatttttacacctgtatacgaatccaaacgttcgtacactgttaagttacaactcactaaatga |
9408710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 29410787 - 29410824
Alignment:
| Q |
204 |
tgcatagaggcatgcacattggtcaagcgttgttccct |
241 |
Q |
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| T |
29410787 |
tgcatagaggcatgcacattggtcaagcgttgttccct |
29410824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 13358005 - 13358041
Alignment:
| Q |
204 |
tgcatagaggcatgcacattggtcaagcgttgttccc |
240 |
Q |
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| T |
13358005 |
tgcatagaggcatgcacattggccaaacgttgttccc |
13358041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 30927776 - 30927816
Alignment:
| Q |
203 |
atgcatagaggcatgcacattggtcaagcgttgttccctct |
243 |
Q |
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| T |
30927776 |
atgcgtagaggcatgcacattggccaagcgttgttccctct |
30927816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 31138128 - 31138162
Alignment:
| Q |
187 |
acgattaatatgacttatgcatagaggcatgcaca |
221 |
Q |
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| T |
31138128 |
acgattaatctgacttatgcatagaggcatgcaca |
31138162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 41223047 - 41223121
Alignment:
| Q |
163 |
cgatttccgacccattaaatgtaaacgattaatatgacttatgcatagaggcatgcacattggtcaagcgttgtt |
237 |
Q |
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| T |
41223047 |
cgatttccgatccattaaagataggcgattaatcagacttatgcgtagaggcatgcgcattggccaaacgttgtt |
41223121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 37319943 - 37319992
Alignment:
| Q |
208 |
tagaggcatgcacattggtcaagcgttgttccctcttgagaatcaaattc |
257 |
Q |
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| T |
37319943 |
tagaggcatgcacacttgtcaagcgttgtttcatcctgagaatcaaattc |
37319992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 34346298 - 34346372
Alignment:
| Q |
166 |
tttccgacccattaaatgtaaacgattaatatgacttatgcatagaggcatgcacattggtcaagcgttgttccc |
240 |
Q |
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| T |
34346298 |
tttccgacccaccaaaggtgagcgattaatctgactcatgcgtagaggcatgcacactggccaagtgttgttccc |
34346372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 20612583 - 20612631
Alignment:
| Q |
203 |
atgcatagaggcatgcacattggtcaagcgttgttccctcttgagaatc |
251 |
Q |
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| T |
20612583 |
atgcatagaggcatgcgcactggccaagtgttgttccctcctgagaatc |
20612631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 149441 - 149409
Alignment:
| Q |
208 |
tagaggcatgcacattggtcaagcgttgttccc |
240 |
Q |
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| T |
149441 |
tagaggcatgcacactggtcaagcgttgttccc |
149409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 39230560 - 39230524
Alignment:
| Q |
203 |
atgcatagaggcatgcacattggtcaagcgttgttcc |
239 |
Q |
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| T |
39230560 |
atgcatagaggcatgcacattagtcaagtgttgttcc |
39230524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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