View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5381_low_12 (Length: 407)
Name: NF5381_low_12
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 49435852 - 49436090
Alignment:
| Q |
12 |
atactgcaaaattaccagaaaacgattaaaaaacgggacgaagatcgcgattaacaaaaattcatagattcataataatttcacgcataaatcaatgcat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
49435852 |
atactgcaaaattaccagaaaacgattaaaaaacgtgacgaagatcgcgataaacaaaaattcatagattcataatcatttcacgcataaatcaatgtat |
49435951 |
T |
|
| Q |
112 |
acattttcagatcaatcaataaatgtgcgaattaaagtaacagtttaacgatcgaagaaaaattgaaaaacctaaccgattcaagaaaatatacaaacga |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49435952 |
acattttcagatcaatcaataaattggcgaattaaagtaacagtttaacgatcgaagaaaaattgaaaaacctaaccgattcaagaaaatatacaaacga |
49436051 |
T |
|
| Q |
212 |
aattaataaagcgcgctaaaaaacgaatgcgattattca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49436052 |
aattaataaagcgcgctaaaaaacgaatgcgattattca |
49436090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 49436139 - 49436231
Alignment:
| Q |
299 |
cacaaattcgatcgtaaccgaaaggatgagaaacgacgagaagctccaccttcacaagcagaagcttctcgaaagagagaaagatgaagtaaa |
391 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49436139 |
cacaaattcgatcgtaacagaaaggatgagaaacgacgagaagctccaccttcacaagcagaagcttctcgaaagagagaaagatgaagtaaa |
49436231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University