View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5381_low_13 (Length: 386)
Name: NF5381_low_13
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 4406683 - 4406850
Alignment:
| Q |
10 |
gaggaggagcacagaaaagttctacattctttgattgacaatgaaaatatgaccgcaacaacaacatcaatgtcttcctctcaaaaaataaaactatcgc |
109 |
Q |
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| T |
4406683 |
gaggatgaacacagaaaagttctacattctttgattgacaatgaaaatatgaccgcagcaacaacatcaatgtcttcctcccaaaacaaaaacctatcgc |
4406782 |
T |
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| Q |
110 |
tattggcctgaactgatttaacggcactttgttattgtcaaaacaaaccatttattaacgcatcactt |
177 |
Q |
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| T |
4406783 |
tattggcctgaactgatttaacggcactttgttattgtcaaaacaaaccctttattaacgcatcactt |
4406850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 4406857 - 4406963
Alignment:
| Q |
201 |
atagctaaaaaataactaactagtaaattataaccttttataatctgttcttattactttaagtgtgtcttttgaaatatattttatatgagtaatagct |
300 |
Q |
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| T |
4406857 |
atagctaaaaaataactaactagtaaattataaccttttataatctgttcttattactttaagtgtgtcttttgaaatatattttatatgagtaatagct |
4406956 |
T |
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| Q |
301 |
gttgtga |
307 |
Q |
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| T |
4406957 |
attgtga |
4406963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 361
Target Start/End: Original strand, 20619070 - 20619226
Alignment:
| Q |
202 |
tagctaaaaaataactaactagtaaattataaccttttataatctgttcttattactttaagtgtgtcttttgaaatatattttatatgagtaatagctg |
301 |
Q |
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| T |
20619070 |
tagctaaaaaataagtaattagtaaattataactctttataatctgttatggttgttgtaagtgtattttataaaatatattttatatgtgtagtagtta |
20619169 |
T |
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| Q |
302 |
ttgtgannnnnnnnctttcttattggctaaatctactattagttttcaaaaaatatttta |
361 |
Q |
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| T |
20619170 |
ttgcgatttttt---tttcttattggttaaatttactattaatttttaaaaaatatttta |
20619226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 14950622 - 14950516
Alignment:
| Q |
201 |
atagctaaaaaataactaactagtaaattataaccttttataatctgttcttattactttaagtgtgtcttttgaaatatattttatatgagtaatagct |
300 |
Q |
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|||||||||||| || ||| ||||||||||||| |||||||| || ||||| || ||||| |||| | || |||| || ||||||||| ||||||| |
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| T |
14950622 |
atagctaaaaaaaaagtaattagtaaattataatcttttatattccattcttgttgctttaggtgtattttatgaagtacattttatatatgtaatagtc |
14950523 |
T |
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| Q |
301 |
gttgtga |
307 |
Q |
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| T |
14950522 |
gttgtga |
14950516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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