View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5381_low_16 (Length: 358)
Name: NF5381_low_16
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_low_16 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 223589 - 223919
Alignment:
| Q |
7 |
aatatcatcgtatcatcactacacctcctaccattatcaacaatagcaactgaactaataattataaattcatcaaccatgaacaacataaactttaatt |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
223589 |
aatatcattatatcatcactacacctcctaccaccatcaacaatagcaactgaattaacgatcataaattcatcaaccattaacaacataaactttaatt |
223688 |
T |
|
| Q |
107 |
ccttaaacaaaaaatcaactcatatcagcaacaacactctcccataaattcatcaacgatctcacaatgtggttgggtcattccaaagcatgtttatcaa |
206 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
223689 |
ccttatacaaaaaatcaactcatatcagcaacaacactctcccataaattcatcaacgatctcacaatgtggttgggtcattccaaagcatgttaatcaa |
223788 |
T |
|
| Q |
207 |
tgtgttcactataatagactaaagcacatcacatgagcttggagttttcttgttgctaatatgatggaaaacctcactttcagtcactttgatgtgttta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
223789 |
tgtgttcactataatagactaaagcacatcacatgagcttggagttttcttgttgctaatatgatggaaaacctcactttcagtcacttttatgtgttta |
223888 |
T |
|
| Q |
307 |
tgtgcacttcttactcaatgacacacgcatg |
337 |
Q |
| |
|
||| |||| |||||||||||||||||||||| |
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|
| T |
223889 |
tgtacactgcttactcaatgacacacgcatg |
223919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 5976834 - 5976723
Alignment:
| Q |
4 |
aataatatcatcgtatcatcactacacctcctaccattatcaacaatagcaactgaactaataattataaattcatcaacc-atgaacaacataaacttt |
102 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||| |||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||| |
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|
| T |
5976834 |
aataatatcatcatctcatcactacacctcc-accaccatcaacaatagcaactaaactaatgaccataaattcatcaacccatgaacaacataaacttt |
5976736 |
T |
|
| Q |
103 |
aattccttaaaca |
115 |
Q |
| |
|
||||||| ||||| |
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|
| T |
5976735 |
aattcctcaaaca |
5976723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 38555029 - 38554699
Alignment:
| Q |
7 |
aatatcatcgtatcatcactacacctcctaccattatcaacaatagcaactgaactaataattataaattcatcaaccatgaacaacataaactttaatt |
106 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
38555029 |
aatatcatcatatcatcactacacctcctaccaccatcaacaatagcaactgaattaacgatcataaattcatcaaccatgaacaacataaactttaatt |
38554930 |
T |
|
| Q |
107 |
ccttaaacaaaaaatcaactcatatcagcaacaacactctcccataaattcatcaacgatctcacaatgtggttgggtcattccaaagcatgtttatcaa |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38554929 |
ccttagacaaaaaatcaactcatatcagcaacaacactctcccataaattcatcaacgatctcacaatgtggttgggtcattccaaagcatgttaatcaa |
38554830 |
T |
|
| Q |
207 |
tgtgttcactataatagactaaagcacatcacatgagcttggagttttcttgttgctaatatgatggaaaacctcactttcagtcactttgatgtgttta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
38554829 |
tgtgttcactataatagactaaagcacatcacacgagcttggagttttcttgttgctaatatgatggaaaacctcactttcagtcacttttatgtgttta |
38554730 |
T |
|
| Q |
307 |
tgtgcacttcttactcaatgacacacgcatg |
337 |
Q |
| |
|
||| |||| ||||||||||||||| |||||| |
|
|
| T |
38554729 |
tgtacactgcttactcaatgacacgcgcatg |
38554699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 160 - 342
Target Start/End: Complemental strand, 31803622 - 31803440
Alignment:
| Q |
160 |
caacgatctcacaatgtggttgggtcattccaaagcatgtttatcaatgtgttcactataatagactaaagcacatcacatgagcttggagttttcttgt |
259 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
31803622 |
caactatctcacaatttggttgggtcattccaaagcatgtttatcaatgtgttcactataatagactaaagcacatcacatgagcttggaattttcttgt |
31803523 |
T |
|
| Q |
260 |
tgctaatatgatggaaaacctcactttcagtcactttgatgtgtttatgtgcacttcttactcaatgacacacgcatgctatg |
342 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| || || |||||| |
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|
| T |
31803522 |
tgctaggatgatagaaaacctcactttcagtcactttgatgtgtttatgtgtactgcttacacaatgacatacacaagctatg |
31803440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 41516114 - 41516003
Alignment:
| Q |
4 |
aataatatcatcgtatcatcactacacctcctaccattatcaacaatagcaactgaactaataattataaattcatcaacc-atgaacaacataaacttt |
102 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||| |||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||| |
|
|
| T |
41516114 |
aataatatcatcatctcatcactacacctcc-accaccatcaacaatagcaactaaactaatgaccataaattcatcaacccatgaacaacataaacttt |
41516016 |
T |
|
| Q |
103 |
aattccttaaaca |
115 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
41516015 |
aattcctcaaaca |
41516003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 28325443 - 28325546
Alignment:
| Q |
4 |
aataatatcatcgtatcatcactacacctcctaccattatcaacaatagcaactgaactaataattataaattcatcaacc-atgaacaacataaacttt |
102 |
Q |
| |
|
|||| ||||||| | |||||||||||||||| |||| |||||||||||||||| ||||||| | ||| ||||||||||| |||||||||||||||||| |
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|
| T |
28325443 |
aatagtatcatcatctcatcactacacctcc-accaccatcaacaatagcaactaaactaatgaccatagattcatcaacccatgaacaacataaacttt |
28325541 |
T |
|
| Q |
103 |
aattc |
107 |
Q |
| |
|
||||| |
|
|
| T |
28325542 |
aattc |
28325546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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