View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5381_low_17 (Length: 334)
Name: NF5381_low_17
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 53688875 - 53688570
Alignment:
| Q |
19 |
cctccggattgaaacccaggtactatgaacattatgcaacaccaagccttcttctgctattcatcatcatgctccaaattctcaacatagaatttttgca |
118 |
Q |
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| T |
53688875 |
cctccggattgaaacccaggtactatgaacattatgcaacaccaagcgttcttctgctattcatcatcatgctccaaattctcaacatagaatttttgca |
53688776 |
T |
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| Q |
119 |
atgttgttggcatatttaagtccgagtttgtgctccatagttccttctcatccaaatatttggctactgtttctgacctgtcatagcaactattaacctc |
218 |
Q |
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| T |
53688775 |
atgttgttggcatatttaagtccgagtttgtgctccatagttccttctcatccaaatatttggctactgtttctgacctgtcatagcaactattaacctc |
53688676 |
T |
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| Q |
219 |
tctcaaacaatcaggccaagatatataatccccagtcatgaacaaaaagtataccaagattctttttaaaaacttcttcacaataaacacgataaagtca |
318 |
Q |
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| T |
53688675 |
tctcaaacaatcaggccaagatatataatcccctgtcatgaacaaaaagtataccaagattctttttaaaaacttcttcacaataaacacgataaagtca |
53688576 |
T |
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| Q |
319 |
gaataa |
324 |
Q |
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||||| |
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| T |
53688575 |
aaataa |
53688570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 53695920 - 53695850
Alignment:
| Q |
54 |
gcaacaccaagccttcttctgctattcatcatcatgctccaaattctcaacatagaatttttgcaatgttg |
124 |
Q |
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| T |
53695920 |
gcaacaccaagccttcttctgctattcatcatcatgctccagattctcaacatagtgtttttgcaatgttg |
53695850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 204 - 324
Target Start/End: Complemental strand, 53695794 - 53695672
Alignment:
| Q |
204 |
gcaactattaacctctctcaaacaatcaggccaagatatataatccccagtcatgaacaaaaagtataccaagattctttttaaaaact--tcttcacaa |
301 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||| |||||| ||||| ||| ||||| |
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| T |
53695794 |
gcaactatttacctctctcaaacaatatggccaagatatataatcccctgtcatagacaaaaattataccatgatgttttttagaaacttctctccacaa |
53695695 |
T |
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| Q |
302 |
taaacacgataaagtcagaataa |
324 |
Q |
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|||||| |||||||||||||| |
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| T |
53695694 |
caaacactgtaaagtcagaataa |
53695672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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