View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5381_low_19 (Length: 311)
Name: NF5381_low_19
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 52294726 - 52294463
Alignment:
| Q |
24 |
tgtgggtctaccttgtgtatcataggaagggaatggtagggttgggcaatcaacatcagataaagaacgcggatagataagaacttatagtgcaaaagcc |
123 |
Q |
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| T |
52294726 |
tgtgggtctaccttgtgtatcataggaagggaatggtagggttgggcaatcaacatcagataaagaacgcggatagataagaacttgtagtgcaaaagcc |
52294627 |
T |
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| Q |
124 |
aaggatttgccttgttcatctggatttagtgcttgttttgaaatgtttatcgggtctgcaggaagaaactgttgtaactttgctannnnnnnaaaactac |
223 |
Q |
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| T |
52294626 |
aaggatttgccttgttcatctggatttagtgcttgtttcgaaatgtttatcgggtctgcaggaagaaactgttgtaactttgctattttttgaaaactac |
52294527 |
T |
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| Q |
224 |
aaaaatgtctttatgaaatcaattaattaaacatacatttgacttgttttccaagtttattcaataatatt |
294 |
Q |
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| T |
52294526 |
aaaaatgtcttta-------aattaattaaacatacatttgacttgttttccaagtttattcaataatatt |
52294463 |
T |
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