View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5381_low_20 (Length: 278)
Name: NF5381_low_20
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 54265657 - 54265819
Alignment:
| Q |
16 |
atgtatctccaaatgtagctattgccattaagaagtttaattggtccggtnnnnnnnntggagctattagattgattaattggtgatgggaaagaattgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54265657 |
atgtatctccaaatgtagctattgccattaagaagtttaattggtccggtaaaaaaaatggagctattagattgattaattggtgatggggaagaattgt |
54265756 |
T |
|
| Q |
116 |
cggtggaggttggaatgaaagcaatattatgcagtactattaagcaaaattcaatggaagcaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54265757 |
cggtggaggttggaatgaaagcaatattatgcagtactattaagcaaaattcaatggaagcaa |
54265819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 54265845 - 54265896
Alignment:
| Q |
213 |
gtacacgctagatgcttcagaataaaagaatcgtttgcccattttgtttgtg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54265845 |
gtacacgctagatgcttcagaataaaagagtcgtttgcccattttgtttgtg |
54265896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University