View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5381_low_22 (Length: 267)
Name: NF5381_low_22
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 4522187 - 4522424
Alignment:
| Q |
18 |
atataagcaaggctaaagaggtatttgtattgtctttatattcttgatatatat--gttaaagaaaatcggtctttacaaacca-----tagagacaatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4522187 |
atataagcaaggctaaagaggtatttgtattgtctttatattcttgatatatatatgttaaagaaaatcggtctttacaaaccataccatagagacaatg |
4522286 |
T |
|
| Q |
111 |
catttctctggccagcaacataagctaacataacaacccactaacacatgaatccaacctataattagaatttagaagtacttaaaaactgctccaatat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4522287 |
catttctctggccagcaacataagctaacataacaacccactaacacatgaatgcaacctataattagaatttagaagtacttaaaaactgctccaatat |
4522386 |
T |
|
| Q |
211 |
taataactaggcttactggtcttctttctcttcctctc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4522387 |
taataactaggcttactggtcttctttctcttcctctc |
4522424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 4524612 - 4524692
Alignment:
| Q |
104 |
gacaatgcatttctctggccagcaacataagct------aacataacaacccacta--acacatgaatccaacctataatt |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
4524612 |
gacaatgcatttctctggccagcaacataaactacgcaaaatataacaactcactaacacacatgattccaacctataatt |
4524692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University