View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5381_low_3 (Length: 564)

Name: NF5381_low_3
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5381_low_3
NF5381_low_3
[»] chr8 (3 HSPs)
chr8 (1-564)||(9408148-9408710)
chr8 (204-241)||(29410787-29410824)
chr8 (204-240)||(13358005-13358041)
[»] chr1 (1 HSPs)
chr1 (203-243)||(30927776-30927816)
[»] chr3 (3 HSPs)
chr3 (187-221)||(31138128-31138162)
chr3 (163-237)||(41223047-41223121)
chr3 (208-257)||(37319943-37319992)
[»] chr2 (2 HSPs)
chr2 (166-240)||(34346298-34346372)
chr2 (203-251)||(20612583-20612631)
[»] scaffold0024 (1 HSPs)
scaffold0024 (208-240)||(149409-149441)
[»] chr7 (1 HSPs)
chr7 (203-239)||(39230524-39230560)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 9408148 - 9408710
Alignment:
Q  1 tcactttgatgcttaaccacgtttttagttcatnnnnnnnnnttatttcattcgtcttaaaatatacatcactttaacaaattttacatgaatcaagaaa 100  Q
    |||||||||||||||||||||||||||||||||         ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  9408148 tcactttgatgcttaaccacgtttttagttcataaaaaaaa-ttatttccttcatcttaaaatatacatcactttaacaaattttacatgaatcgagaaa 9408246  T
Q  101 ggtgataaagtttatatgaaaaaggtaaattaagaattactttannnnnnnnnnnnnnggatcgatttccgacccattaaatgtaaacgattaatatgac 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||    
T  9408247 gatgataaagtttatatgaaaaaggtaaattaagaattactttattttttttgtttttggatcgatttccgacccattaaatgtaaacgattaatatgac 9408346  T
Q  201 ttatgcatagaggcatgcacattggtcaagcgttgttccctcttgagaatcaaattctgcattcgctacatctttgaaaggagttccttttactactgga 300  Q
    | |||||||||||||||| |||||| ||| | |||||||||| ||||||||||| || | ||||||||| | ||||  ||||  |||||   |||| |||    
T  9408347 tcatgcatagaggcatgcgcattggccaaacattgttccctcctgagaatcaaactcggtattcgctacgtttttggtaggaactccttg--ctaccgga 9408444  T
Q  301 gctcatacaacttggttaattaagaattactttacaaaatagaaaacgtgttttttccattgtacttataatcccctcgtgaaatttaatgnnnnnnnnn 400  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  9408445 gctcaagcaacttggttaattaagaattactttacaaaatagaaaacgtgttttttccattgtacttataatcccctcgtgaaatttaatgttttttttt 9408544  T
Q  401 cttttctattatctcttttgtacttataaccccctcatgaaatttaatgnnnnnnnnnn--ctttctttccattatcacttttgtatggtacagtgatat 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||| |||||||||||||||||||||||||||||    
T  9408545 cttttctattatctcttttgtacttataaccccctcatgaaatttaatgttttttttctttctttctttctattatcacttttgtatggtacagtgatat 9408644  T
Q  499 gggatttttacacctgtatacgaatccaaacgttcgtacactgttaagttacaactcactaaatga 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9408645 gggatttttacacctgtatacgaatccaaacgttcgtacactgttaagttacaactcactaaatga 9408710  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 29410787 - 29410824
Alignment:
Q  204 tgcatagaggcatgcacattggtcaagcgttgttccct 241  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29410787 tgcatagaggcatgcacattggtcaagcgttgttccct 29410824  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 13358005 - 13358041
Alignment:
Q  204 tgcatagaggcatgcacattggtcaagcgttgttccc 240  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  13358005 tgcatagaggcatgcacattggccaaacgttgttccc 13358041  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 30927776 - 30927816
Alignment:
Q  203 atgcatagaggcatgcacattggtcaagcgttgttccctct 243  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  30927776 atgcgtagaggcatgcacattggccaagcgttgttccctct 30927816  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 31138128 - 31138162
Alignment:
Q  187 acgattaatatgacttatgcatagaggcatgcaca 221  Q
    ||||||||| |||||||||||||||||||||||||    
T  31138128 acgattaatctgacttatgcatagaggcatgcaca 31138162  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 41223047 - 41223121
Alignment:
Q  163 cgatttccgacccattaaatgtaaacgattaatatgacttatgcatagaggcatgcacattggtcaagcgttgtt 237  Q
    |||||||||| ||||||||  ||  ||||||||  ||||||||| ||||||||||| |||||| ||| |||||||    
T  41223047 cgatttccgatccattaaagataggcgattaatcagacttatgcgtagaggcatgcgcattggccaaacgttgtt 41223121  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 37319943 - 37319992
Alignment:
Q  208 tagaggcatgcacattggtcaagcgttgttccctcttgagaatcaaattc 257  Q
    |||||||||||||| | ||||||||||||| | || ||||||||||||||    
T  37319943 tagaggcatgcacacttgtcaagcgttgtttcatcctgagaatcaaattc 37319992  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 34346298 - 34346372
Alignment:
Q  166 tttccgacccattaaatgtaaacgattaatatgacttatgcatagaggcatgcacattggtcaagcgttgttccc 240  Q
    |||||||||||  ||| || | |||||||| ||||| |||| |||||||||||||| ||| |||| |||||||||    
T  34346298 tttccgacccaccaaaggtgagcgattaatctgactcatgcgtagaggcatgcacactggccaagtgttgttccc 34346372  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 20612583 - 20612631
Alignment:
Q  203 atgcatagaggcatgcacattggtcaagcgttgttccctcttgagaatc 251  Q
    |||||||||||||||| || ||| |||| ||||||||||| ||||||||    
T  20612583 atgcatagaggcatgcgcactggccaagtgttgttccctcctgagaatc 20612631  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 149441 - 149409
Alignment:
Q  208 tagaggcatgcacattggtcaagcgttgttccc 240  Q
    |||||||||||||| ||||||||||||||||||    
T  149441 tagaggcatgcacactggtcaagcgttgttccc 149409  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 39230560 - 39230524
Alignment:
Q  203 atgcatagaggcatgcacattggtcaagcgttgttcc 239  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  39230560 atgcatagaggcatgcacattagtcaagtgttgttcc 39230524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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