View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5381_low_37 (Length: 218)
Name: NF5381_low_37
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_low_37 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27188336 - 27188134
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27188336 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
27188237 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||||||| || |||||||||||||||||||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
27188236 |
taccatagtacccttcaccaagtaactctttaagctcttccttgaatcctaaatgcatttctcaagcttccttgtctgcctttaatatcttttgagtcaa |
27188137 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
27188136 |
gta |
27188134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13544983 - 13544781
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
13544983 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactctaccaatgtattttttttcaataaacacttttggtaatcctcctt |
13544884 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||| |||||||| || |
|
|
| T |
13544883 |
taccatagtacccttcaccaagtaactctttaagctcttccttgaatcctaaatacatttctcaagcttccttgtttgcctttaatatcttttgagtaaa |
13544784 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
13544783 |
gta |
13544781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27341591 - 27341389
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || || |
|
|
| T |
27341591 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgtatttcttttcaataaacacttttggcaatcctcttt |
27341492 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||||| ||||||||| ||| | ||||||||||||||| || ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
27341491 |
taccatagtactcttcaccaagtaactctttaagctcttccttgaatcctaaatgcatttctcaagcttctttgtttgtctttaatatcttttgagtcaa |
27341392 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
27341391 |
gta |
27341389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 38424525 - 38424325
Alignment:
| Q |
3 |
aagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttccttta |
102 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
38424525 |
aagcgatttctcaagcttcttgtcaacatgaagtttctgaatttccttaactccaccaatgtatttcttttcaaaaaacacttttgataatcctccttta |
38424426 |
T |
|
| Q |
103 |
ccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaagt |
202 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||| |||||| || ||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||| |
|
|
| T |
38424425 |
ccatagtacccttcaccaagtaactctttaagctattccttgaatcctaaatgcatttctcaagcttctttgtttgcctttgatatcttttgagtcaagt |
38424326 |
T |
|
| Q |
203 |
a |
203 |
Q |
| |
|
| |
|
|
| T |
38424325 |
a |
38424325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 25456037 - 25456237
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
25456037 |
tcaagcaatttctcaagcttcttgtcatcatgaactttctgaatttcctcaactcaaccaatgtatttcttttcaataaacacttttggtaatcctcatt |
25456136 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttcc-ttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtca |
199 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||||| || || | |||||| |||| ||||||| ||| || |||||||||| |||||||||| |
|
|
| T |
25456137 |
taccatagtacccttcaccaagtaactctttaagctcttcctttgaatcttaaatgtattttacaagctttctttctttactttaatatcttttgagtca |
25456236 |
T |
|
| Q |
200 |
a |
200 |
Q |
| |
|
| |
|
|
| T |
25456237 |
a |
25456237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 21362134 - 21361980
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
21362134 |
tcaagtaattactcaagcttcttgtcatcatgaagtttctgaatttcctcaactccagcaatgtttttctttccaataaacacttttggtaatcctcctt |
21362035 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatg |
155 |
Q |
| |
|
|||||||||||||| |||||| ||| | ||| | |||||| || || |||||||| |
|
|
| T |
21362034 |
taccatagtaccctccaccaagtaactcttttaactcttcattgaatcctaaatg |
21361980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 32154989 - 32155191
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
32154989 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaacgtatttcttttcaagaaacacttttggtaatcatcctt |
32155088 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||||| ||||||||| ||| | |||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||| ||||||||||| |
|
|
| T |
32155089 |
taccatagtactcttcaccaagtaactctttaagctcttccttaaatcctaaatgcatttctcaagctttcttgcttgcctttaatatcttttgagtcaa |
32155188 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
32155189 |
gta |
32155191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 14608462 - 14608294
Alignment:
| Q |
4 |
agcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctttac |
103 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| | |||||||| | |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14608462 |
agcaatttctcaaacttcttgtcatcacaaagtctctgaatttcct-aactccacaaatgtatttcttttcaaaaaacacttttggtaatcctcctttac |
14608364 |
T |
|
| Q |
104 |
catagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttcctt |
173 |
Q |
| |
|
||||||| |||||||||| ||| | ||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
14608363 |
catagtatccttcaccaagtaactctttaagctcttccttgaattctaaatgcatttctcaagcttcctt |
14608294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 3377520 - 3377368
Alignment:
| Q |
7 |
aatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctttaccat |
106 |
Q |
| |
|
|||||||||||||| || |||||||| | ||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |
|
|
| T |
3377520 |
aatttctcaagctttttatcatcatgtaatttctgaatttcctcaactccaccaatgtatttccttccaataaacacttttggtaatccacctttaccat |
3377421 |
T |
|
| Q |
107 |
agtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatt |
159 |
Q |
| |
|
||| ||||||||||| ||| | ||| |||||||||||||| |||||||||||| |
|
|
| T |
3377420 |
agttcccttcaccaagtaactctttgagctcttccttaaatcctaaatgcatt |
3377368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 22388762 - 22388560
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
22388762 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgtatttcttttcactaaacacttttggtaatcctcctc |
22388663 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||| ||||||||| || ||||||||||||| | ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22388662 |
taccatagtacccttcaccaagtaactctttaaactcttccttgaatcctaaatgcatttataaagcttccttgtttgtctttaatatcttttgagtcaa |
22388563 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
22388562 |
gta |
22388560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 43214896 - 43214694
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| | |
|
|
| T |
43214896 |
tcaaacaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgtatttctttttaataaacacttttggtaatcctccat |
43214797 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||| |||||| |||||||||| ||| | |||||||| |||||| || |||||||| ||||||||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
43214796 |
tacaatagtatccttcaccaagtaactctttaagcttttccttgaatcctaaatgtatttctcaaacttccttgtttgcctttaatatcttttgagtcaa |
43214697 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
43214696 |
gta |
43214694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 44209512 - 44209347
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44209512 |
tcaagcaatttctcaagcttcttgccatcatgaagtttctgaatttcctcaactccaccaacgtatttcttttcaataaacacttttggtaatcctcctt |
44209413 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaag |
166 |
Q |
| |
|
||||||||||| ||||||||| ||| | |||||||| |||||| || ||||||| ||||||||||| |
|
|
| T |
44209412 |
taccatagtactcttcaccaagtaactctttaagctattccttgaatcctaaatacatttctcaag |
44209347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 32814646 - 32814450
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32814646 |
tcaaacaatttctcaagtttcttgtcatcatgaaatttctgaatttcctcaactccaccaatgtatttcttttcaataaacacttttggtaatcctcctt |
32814547 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagt |
197 |
Q |
| |
|
|||| ||||| |||||||| ||| | ||||||||||||||| || ||||||| ||||||| |||||| |||||||| ||||||||| ||||||| |
|
|
| T |
32814546 |
taccgtagtattcttcaccaggtaactctttaagctcttccttgaatcctaaatacatttcttaagctttcttgtttgcctttaatatcctttgagt |
32814450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14252287 - 14252086
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |
|
|
| T |
14252287 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttttgaatttcctcaactccaccaatgtatttcttttcaataaacactttttgtaatcctcatt |
14252188 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||| | |||||||| ||| || || | ||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
14252187 |
taccatagtacccttcaccaagtaactctttaagctattctttgaatcttaaatgcatttctcaagcttccttgtttgcctttaatatcttttgagtcaa |
14252088 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
14252087 |
gt |
14252086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 9758711 - 9758509
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9758711 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaacgtatttcttttcaataaacacttttggtaatcctcctt |
9758612 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||||| |||| ||| ||| | ||||| ||||||||| || ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
9758611 |
taccatagtactcttcgtcaagtaactctttaaactcttccttgaatcctaaatgcatttctcaagcttccttgcttgcctttaatatcttttgagtcaa |
9758512 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
9758511 |
gta |
9758509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 5607219 - 5607017
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
5607219 |
tcaagcaatttctcaagcttcttgttatcatgaagtttctgaatttcctcaactccaccaacttatttattttcaataaacacttttggtaatcctcctt |
5607120 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
|||||||||| |||||||||| ||| | |||||| |||| ||| || ||||||||||||| |||||||||| |||||| ||||||| | ||||||||||| |
|
|
| T |
5607119 |
taccatagtatccttcaccaagtaactctttaagttctttcttgaatcctaaatgcatttatcaagcttccctgtttgcctttaatgtcttttgagtcaa |
5607020 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
5607019 |
gta |
5607017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 10317376 - 10317578
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
10317376 |
tcaagcaatttctcaagctttttgtcatcatgaagtttctgaattttctcaactccaccaatgtacttcttttcaataaacacttttattaatcctcctt |
10317475 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||||||| || ||||||||||| |||| ||||| | |||| ||||||||| ||||||||||| |
|
|
| T |
10317476 |
taccatagtacccttcaccaagtaactctttaagctcttccttgaattttaaatgcatttttcaaacttccatatttgtctttaatatcttttgagtcaa |
10317575 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
10317576 |
gta |
10317578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10315603 - 10315648
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaattt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10315603 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattt |
10315648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10315967 - 10316012
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaattt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10315967 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattt |
10316012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10316331 - 10316376
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaattt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10316331 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattt |
10316376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10316656 - 10316701
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaattt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10316656 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattt |
10316701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10317013 - 10317058
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaattt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10317013 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattt |
10317058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 4904 - 5106
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4904 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgtatttcttttcaataaacacttttggtaatcctcctt |
5003 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
|||||||||| ||||||||| ||| | || ||| |||||||| || | ||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
5004 |
taccatagtatgcttcaccaagtaactcttcaagttcttccttgaatcttaaatgcatttctcaagcttccttgtttgcctttaattatttttgagtcaa |
5103 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
5104 |
gta |
5106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 21386914 - 21387115
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21386914 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctaaatttcctcaactccaccaatgtatttcttttcaataaacacttttggtaatcctcctt |
21387013 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||| |||||||||| ||| | ||||||||||||||| || | |||||||| || ||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
21387014 |
taccatagtttccttcaccaagtaactctttaagctcttccttgaatcataaatgca-ttatcaagcttccttgtttgcctttaatatcttttgagtcaa |
21387112 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
21387113 |
gta |
21387115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 29644564 - 29644362
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
29644564 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaacttcatcaatgtatttcttttcaataaacaattttggtaatcctcctt |
29644465 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||| || |||||| || ||||| | ||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
29644464 |
taccatagtacccttcaccaagtaactctttaaactattccttgaatcctaattacatttctcaagcttccttgtttgcctttaatattttttgagtcaa |
29644365 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
29644364 |
gta |
29644362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 30022815 - 30022613
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
30022815 |
tcaagtaatttctcaagtttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgtatttcatttcaataagcacttttggtaatcctcctt |
30022716 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
|||||||||||| |||||||| ||| | ||||| ||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
30022715 |
taccatagtaccattcaccaagtaactctttaaactcttccttgaatcctaaatgcatttctcaagcttccttgtttgcatttaatatcttttgagtcaa |
30022616 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
30022615 |
gta |
30022613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 33697026 - 33697219
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
33697026 |
tcaaacaatttctcaagcttcttgtcatcatgaagtttct---------caactccaccaatgtatttcttttcaataaacactttttgtaattctcctt |
33697116 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtcaa |
200 |
Q |
| |
|
||| |||||| |||||||||| ||| | ||||| ||||||||| || ||||||| ||||| ||||||||| || |||| ||||||||| ||||||| || |
|
|
| T |
33697117 |
tactatagtatccttcaccaagtaattctttaaactcttccttgaatcctaaatacatttatcaagcttcgttctttgcctttaatatcatttgagtaaa |
33697216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 42491215 - 42491327
Alignment:
| Q |
90 |
taatcttcctttaccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatata |
189 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||| |||| ||| |||||||| || |||||||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
42491215 |
taatcctcctttaccatagtatccttcaccaactaactttt-aagttcttccttgaatcctaaatgcatttctcaaacttctttgtttgcctttaatatc |
42491313 |
T |
|
| Q |
190 |
ttttgagtcaagta |
203 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
42491314 |
ttttgaatcaagta |
42491327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 21858037 - 21857834
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatc-aactccaccaatgtatttcttttcaataaacacttttggtaatcttcct |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
21858037 |
tcaagcaattcctcaagcttcttgtcatcatgaagtttctgaatttcttttaactccaccaatgtatttcttttcaataaacacttttggtaatcctctt |
21857938 |
T |
|
| Q |
100 |
ttaccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtca |
199 |
Q |
| |
|
||||||| | |||||||||||| ||| | || ||||||||| || || ||||||||||||||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
21857937 |
ttaccatggaacccttcaccaagtaactcttaaagctcttctttgaatcctaaatgcatttctcaagcttctttgtttgcctttaatatcttttgagtca |
21857838 |
T |
|
| Q |
200 |
agta |
203 |
Q |
| |
|
|||| |
|
|
| T |
21857837 |
agta |
21857834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 21913900 - 21913697
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatc-aactccaccaatgtatttcttttcaataaacacttttggtaatcttcct |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
21913900 |
tcaagcaattcctcaagcttcttgtcatcatgaagtttctgaatttcttttaactccaccaatgtatttcttttcaataaacacttttggtaatcctctt |
21913801 |
T |
|
| Q |
100 |
ttaccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtca |
199 |
Q |
| |
|
||||||| | |||||||||||| ||| | || ||||||||| || || ||||||||||||||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
21913800 |
ttaccatggaacccttcaccaagtaactcttaaagctcttctttgaatcctaaatgcatttctcaagcttctttgtttgcctttaatatcttttgagtca |
21913701 |
T |
|
| Q |
200 |
agta |
203 |
Q |
| |
|
|||| |
|
|
| T |
21913700 |
agta |
21913697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 35194550 - 35194753
Alignment:
| Q |
3 |
aagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatct----tcc |
98 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
35194550 |
aagcaatttctcaaacttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgtatttcttttcaa-aaacacttttgataatcaatcctcc |
35194648 |
T |
|
| Q |
99 |
tttaccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtc |
198 |
Q |
| |
|
|||||||||||||||||||| || ||| | |||||||| |||||| || |||||||| ||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
35194649 |
tttaccatagtacccttcacgaagtaactatttaagctattccttgaatcctaaatgtgtttctcaagcttccttgtttgcctttaatatcttttgagtc |
35194748 |
T |
|
| Q |
199 |
aagta |
203 |
Q |
| |
|
||||| |
|
|
| T |
35194749 |
aagta |
35194753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 45765042 - 45765200
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
45765042 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttctaaatttcctcaactccaacaatgtatttctttccaataaacacttttggtaatcctcatt |
45765141 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatt |
159 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||| ||||||||||| |||||||||||| |
|
|
| T |
45765142 |
taccatagtaccattcaccaaataactctttaagttcttccttaaatcctaaatgcatt |
45765200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 12595070 - 12595271
Alignment:
| Q |
2 |
caagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccac---caatgtatttcttttcaataaacacttttggtaatcttcc |
98 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
12595070 |
caagcaatttctcaagcttcttgccatcatgaagtttctgaatttcctcaactccaccaccaatgtatttcttttcaataaacacatttggtaatcctca |
12595169 |
T |
|
| Q |
99 |
tttaccatagtacccttcaccaaataaatttttaagctcttccttaaaccctaaatgcatttctcaagcttccttgtttgactttaatatattttgagtc |
198 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||| || ||| || ||||||||| |||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
12595170 |
tttaccatagtacccttcaccaagtaactatttaagcttttacttgaatcctaaatgc---gctcaagcttctttgtttacctttaatatcttttgagtc |
12595266 |
T |
|
| Q |
199 |
aagta |
203 |
Q |
| |
|
||||| |
|
|
| T |
12595267 |
aagta |
12595271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 9666019 - 9666161
Alignment:
| Q |
1 |
tcaagcaatttctcaagcttcttgtcatcatgaagtttatgaatttcatcaactccaccaatgtatttcttttcaataaacacttttggtaatcttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||| || |||||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
9666019 |
tcaagcaatttctcaagcttcttgtcattatgaagtttatgaatttcctcaactacaacaatgtatttctttccaataaatacttttggtaatcctcctt |
9666118 |
T |
|
| Q |
101 |
taccatagtacccttcaccaaataaatttttaagctcttcctt |
143 |
Q |
| |
|
|| ||||||||| |||||||| ||| | ||||||||||||||| |
|
|
| T |
9666119 |
tatcatagtacctttcaccaagtaactctttaagctcttcctt |
9666161 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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