View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5381_low_5 (Length: 457)
Name: NF5381_low_5
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5381_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 10 - 440
Target Start/End: Complemental strand, 32540313 - 32539883
Alignment:
| Q |
10 |
ataatactattgtaactaaaaggagttcttaaggtggaattctcccaaggtaaatgaacaaaatgtacattgtgtttaggccacgccatccatcgttaag |
109 |
Q |
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| T |
32540313 |
ataatactactgtaactaaaaggggttcttaaggtggaatcctcccaaggtaaatgaacaaaatgtacattgtgtttaggccacaccatccatcgttaag |
32540214 |
T |
|
| Q |
110 |
tccccttatgaaacttgaaacaatttccaggagattatcggcaaaagaagagtttgagaatttcaaccccttctcgatgacttgctatttagtcatgatg |
209 |
Q |
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| T |
32540213 |
tccccttatgaaacttgaaacaatttccaggagattatcggcaaaagaagagtttgagaatttcaatcccttctcgatgacttgctatttagtcatgatg |
32540114 |
T |
|
| Q |
210 |
gcaactgtttttcagtcttaaccttctggttccgaagagaagaggtctctggtaatccaaagttcggctggaaagtaagcaaagtgaatgatttgctaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32540113 |
gcaactgtttttcagtcttaaccttctggttccgaagagaagaggtctctggtaatccaaagttcggctggaaagtaagcaaagtgaatgatttgctaca |
32540014 |
T |
|
| Q |
310 |
gtcatattcaaactcagattcttcaaaacgattcattggactttaatcgaagcttatcagttaatgtcttgatggcaatgggacaacaggaagaggaggc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32540013 |
gtcatattcaaactcagattcttcaaaacgattcattggactttaatcgaagcttatcagttaatgtcttgatggcaatgggacaacaggaagaggaggc |
32539914 |
T |
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| Q |
410 |
tcaatggtcccaactttaagccactgcttat |
440 |
Q |
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||||| ||||||||||||||||||||||||| |
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| T |
32539913 |
tcaatagtcccaactttaagccactgcttat |
32539883 |
T |
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