View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5381_low_6 (Length: 455)

Name: NF5381_low_6
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5381_low_6
NF5381_low_6
[»] chr1 (4 HSPs)
chr1 (151-424)||(10979575-10979848)
chr1 (1-113)||(10979889-10980001)
chr1 (374-424)||(20261029-20261079)
chr1 (351-424)||(18237467-18237540)
[»] chr3 (3 HSPs)
chr3 (151-423)||(18761493-18761765)
chr3 (1-119)||(18761339-18761457)
chr3 (358-423)||(38285664-38285729)
[»] scaffold0011 (1 HSPs)
scaffold0011 (351-422)||(135223-135294)
[»] chr6 (2 HSPs)
chr6 (358-426)||(13070200-13070268)
chr6 (374-423)||(15356096-15356145)
[»] chr8 (2 HSPs)
chr8 (374-425)||(3730641-3730692)
chr8 (358-424)||(28156892-28156958)
[»] chr7 (1 HSPs)
chr7 (374-424)||(2755403-2755453)
[»] chr2 (1 HSPs)
chr2 (374-424)||(28654848-28654898)
[»] scaffold0576 (1 HSPs)
scaffold0576 (374-423)||(1086-1135)
[»] chr5 (1 HSPs)
chr5 (376-424)||(20745868-20745916)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 151 - 424
Target Start/End: Complemental strand, 10979848 - 10979575
Alignment:
Q  151 atttgacaatggctaagatagcatttagtcataaagtgctaacaaataatatatccttatattagcgttcctgtaaaagcgatatcatacttttccttta 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979848 atttgacaatggctaagatagcatttagtcataaagtgctaacaaataatatatccttatattagcgttcctgtaaaagcgatatcatacttttccttta 10979749  T
Q  251 nnnnnnnaaacaacctatattagcgtttttatacagagtgctattacatatgtcatctgttaatagcgccgacagccaaaacgctattacaggagacgag 350  Q
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  10979748 tttttttaaactacctatattagcgtttttatacagagtgctattacatatgtcatctgttaatagcgcctgcagccaaaacgctattacgggagacgag 10979649  T
Q  351 gtcagctttttaatagcatttcttttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagtg 424  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  10979648 gtcagctttttaatagcattccttttaaaaatgctattaaataggcgctaataaatgttaaaattggcgtagtg 10979575  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 10980001 - 10979889
Alignment:
Q  1 aagggttgtctggatcgacgtgggtgctggttttgagagggtactgtgttaaatctggttttgggagaagagagggaaaggaaaaacagttcagcgcgaa 100  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  10980001 aagggttgtctggatcgatgtgggtactggttttgagagggtactgtgttaaatctggttttgggagaagagagggaaaggaaaaatagttcagcgccaa 10979902  T
Q  101 aggatgaaaacat 113  Q
    |||||||||||||    
T  10979901 aggatgaaaacat 10979889  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 20261079 - 20261029
Alignment:
Q  374 tttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagtg 424  Q
    ||||||| |||||||||||| |||||| ||||||| |||||||| ||||||    
T  20261079 tttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagtg 20261029  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 424
Target Start/End: Original strand, 18237467 - 18237540
Alignment:
Q  351 gtcagctttttaatagcatttcttttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagtg 424  Q
    ||||||||||| |||| | ||| ||| ||| |||||||||||  ||  |||||||||| |||||||||||||||    
T  18237467 gtcagctttttgatagtagttcctttgaaagtgctattaaatgggcattattaaatgtaaaaattggcgtagtg 18237540  T

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Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 151 - 423
Target Start/End: Original strand, 18761493 - 18761765
Alignment:
Q  151 atttgacaatggctaagatagcatttagtcataaagtgctaacaaataatatatccttatattagcgttcctgtaaaagcgatatcatacttttccttta 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18761493 atttgacaatggctaagatagcatttagtcataaagtgctaacaaataatatatccttatattagcgttcctgtaaaagcgatatcatacttttccttta 18761592  T
Q  251 nnnnnnnaaacaacctatattagcgtttttatacagagtgctattacatatgtcatctgttaatagcgccgacagccaaaacgctattacaggagacgag 350  Q
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  18761593 tttttttaaactacctatattagcgtttttatacagagtgctattacatatgtcatctgttaatagcgcctgcagccaaaacgctattacgggagacgag 18761692  T
Q  351 gtcagctttttaatagcatttcttttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagt 423  Q
    |||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  18761693 gtcagctttttaatagcattccttttaaaaatgccattaaataggcgctaataaatgttaaaattggcgtagt 18761765  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 18761339 - 18761457
Alignment:
Q  1 aagggttgtctggatcgacgtgggtgctggttttgagagggtactgtgttaaatctggttttgggagaagagagggaaaggaaaaacagttcagcgcgaa 100  Q
    |||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  18761339 aagggttgtctggatcgatgtgggtactagttttgagagggtactgtgttaaatctggttttgggagaagagagggaaaggaaaaatagttcagcgccaa 18761438  T
Q  101 aggatgaaaacatgtgcgg 119  Q
    ||||||||||||| |||||    
T  18761439 aggatgaaaacatttgcgg 18761457  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 38285729 - 38285664
Alignment:
Q  358 ttttaatagcatttcttttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagt 423  Q
    |||| ||||||||| || ||||| ||||||||||| ||| ||| ||||| | ||||||||||||||    
T  38285729 ttttcatagcattttttctaaaagtgctattaaattagctctactaaatctcaaaattggcgtagt 38285664  T

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Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 135294 - 135223
Alignment:
Q  351 gtcagctttttaatagcatttcttttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtag 422  Q
    ||||| |||||  ||||| || || ||||| |||||||||||  ||||||||||||||||||||||||||||    
T  135294 gtcagttttttgttagcactttttctaaaagtgctattaaatgggcgctattaaatgttaaaattggcgtag 135223  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 13070200 - 13070268
Alignment:
Q  358 ttttaatagcatttcttttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagtggt 426  Q
    |||| |||||||||  | ||||| ||||||||||| ||||||| ||||| | |||||||||||||||||    
T  13070200 ttttcatagcattttctctaaaagtgctattaaattagcgctactaaatttcaaaattggcgtagtggt 13070268  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 15356145 - 15356096
Alignment:
Q  374 tttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagt 423  Q
    ||||||| |||||||||||| |||||| ||||||| |||||||| |||||    
T  15356145 tttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagt 15356096  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 3730692 - 3730641
Alignment:
Q  374 tttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagtgg 425  Q
    ||||||| |||||||||||| |||||| ||||||| |||||||| |||||||    
T  3730692 tttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagtgg 3730641  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 28156958 - 28156892
Alignment:
Q  358 ttttaatagcatttcttttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagtg 424  Q
    |||| |||||||||  | ||||| ||||||||||| ||||||| ||||| | |||||||||||||||    
T  28156958 ttttcatagcattttctctaaaagtgctattaaattagcgctactaaatctcaaaattggcgtagtg 28156892  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 2755403 - 2755453
Alignment:
Q  374 tttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagtg 424  Q
    ||||||| |||||||||||| |||||| ||||||| |||||||| ||||||    
T  2755403 tttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagtg 2755453  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 28654898 - 28654848
Alignment:
Q  374 tttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagtg 424  Q
    ||||||| |||||||||||| |||||| ||||||| |||||||| ||||||    
T  28654898 tttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagtg 28654848  T

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Target: scaffold0576 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 1135 - 1086
Alignment:
Q  374 tttaaaaatgctattaaataagcgctattaaatgttaaaattggcgtagt 423  Q
    ||||||| |||||||||||| |||||| ||||||| |||||||| |||||    
T  1135 tttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagt 1086  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 20745916 - 20745868
Alignment:
Q  376 taaaaatgctattaaataagcgctattaaatgttaaaattggcgtagtg 424  Q
    ||||| ||||||||||| || |||| ||||||| |||||||||||||||    
T  20745916 taaaagtgctattaaatgagtgctactaaatgtcaaaattggcgtagtg 20745868  T

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